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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTGgttagtttttattttctaattcaaatgagtcttgaatcgatgtggttggaagccatttgaaaactgtgttttggttcacttttttccag

Basic information

species Glycine max
transcript GLYMA06G15510.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G15510.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g47850.3 (Oryza sativa), 5'ss of exon 4
GTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTGgttagtttttattttctaattcaaatgagtcttgaatcgatgtggtt--ggaagccatttgaaaactgtgttttggttcacttttt-tccag
||||||||| |||||||| ||||| || |||||||| || ||||| |||||||| || ||||||||||| ||||||||  | |||  ||||  || | | || | | | ||||   | || |||   ||||   ||     |     ||| ||  | |       |  | |  |  | |||
GTATCAAGAGATTTTGACTGATCCAAGCTATGCTGGTCAATTTGTCCTCATGACCAACCCACATATTGGAAACACTGGTGTTAATCCTGgtccgtatcttttctattagtcaat--aatcatgatatgatgccatttccacaatagcttgtaagttttaacaaattagaatgctcatgcag

upper sequence: GLYMA06G15510.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G029573_T01 (Zea mays), 5'ss of exon 4
GTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTGgttagtttttattttctaattcaaatgagtcttgaatcgatgtggttggaagccatttgaaaactgtgttttggttcacttttttccag
 ||||| || |||||||| ||||| ||||||||||| |||||||| || ||||| ||||| |||||||||||||||||| | |||  ||||| |||  |  | |||| || |   |||  || |   |   |  ||    | || || |  |     |   |  | |   | || |||
CTATCAGGAGATTTTGACCGATCCAAGTTATGCTGGTCAGTTTGTCCTAATGACCAATCCTCATATTGGGAACACTGGCGTTAATCCTGgtttgttact--tctctacttga---gagatttaatatgccttttttttttgacaatttagcatgaaatgaagtataatgctcttacag

upper sequence: GLYMA06G15510.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G147450_T02 (Zea mays), 5'ss of exon 3
GTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTGgttagtttttattttctaattcaaatgagtcttgaatcgatgtggttggaagccatttgaaaactgtgttttggttcacttttttccag
 ||||| || |||||||||||||| || |||||||| || ||||| || ||||| ||||| |||||||| ||||||||| | |||  ||||| |||| |  | |||| || | |      || ||| |   |  ||   | | || | | |  ||   |   ||  | |  || |   
CTATCAGGAGATTTTGACAGATCCAAGCTATGCTGGTCAATTTGTCCTGATGACCAATCCCCATATTGGTAACACTGGCGTTAATCCTGgtttgtttct--tctctacttaagaga----ttcaataggcctttttttga-caatgtaaca--tgaaatgaagtataatgcttgcag-

upper sequence: GLYMA06G15510.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G27740.2 (Arabidopsis thaliana), 5'ss of exon 3
GTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTGgttagtttttattttctaa--ttcaaatgagtcttgaatcgatgtggttggaagc--------catttgaaaac-tgtgttttggttcacttttttccag
||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||| ||||| ||||| || |||||  | |||  |||| |||     |||   ||  |||  ||       |||   ||||  |               |||||| |||  | |||| | | | |        | |
GTATCAAGAAATTTTAACTGATCCTAGTTATGCTGGGCAGTTTGTGCTAATGACAAACCCACAAATTGGTAATACTGGTGTCAATCCTGgtaagtggcagtttcgaaactttcgtatacactaggaacttatgttctcaatgtttcttattacatttgtaaatgtttgttgtagatgatgaagaatctg

upper sequence: GLYMA06G15510.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G27740.1 (Arabidopsis thaliana), 5'ss of exon 3
GTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTGgttagtttttattttctaa--ttcaaatgagtcttgaatcgatgtggttggaagccatttgaaaactgtgttttggttcacttttttccag
||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||| ||||| ||||| || |||||  | |||  |||| |||     |||   ||  |||  ||       |||   ||||   |  | |    ||   |  | |||    |||   | |       
GTATCAAGAAATTTTAACTGATCCTAGTTATGCTGGGCAGTTTGTGCTAATGACAAACCCACAAATTGGTAATACTGGTGTCAATCCTGgtaagtggcagtttcgaaactttcgtatacactaggaacttatgtt-ctcaatgtttcttattacatttgtaaatgtttgttgtag-----

upper sequence: GLYMA06G15510.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0044g00550.t01 (Vitis vinifera), 5'ss of exon 3
GTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTGgttagtttttattttctaattcaaatgagtcttgaatcgatgtggttggaagccatttgaaaactgtgttttggttcacttttt-tccag
 ||||| |||||| | ||||| |||||||||||||| ||||| ||  | |||||||||||||||||||| ||||| ||  |||||||||||  |     ||||  |||||| |||     ||| | |  |||| | | || | |||| ||||||   |   | |    |   |  ||||
ATATCAGGAAATTCTTACAGACCCTAGTTATGCTGGTCAGTTCGTCTTAATGACAAATCCACATATTGGCAACACGGGGGTAAATTTTGgtagggga--atttcttaattctaata---tttgcaaccttgtgttggtaaactattt-aaaactaaatacagatcgcttccctgcccag

upper sequence: GLYMA06G15510.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ07419 (Selaginella moellendorffii), 5'ss of exon 3
GTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTGgttagtttttattttctaattcaaatgagtcttgaatcgatgtggttggaagccatttgaaaactgtgttttggttcacttttttccag
|||||| || ||| | || ||||| ||||||||||||||||| ||| | |||||  | || || ||||||||||||||| | ||||||||| |||||||   |||| |  |   || || || |      ||   |  |                                       
GTATCAGGAGATTATCACTGATCCGAGTTATGCTGGCCAGTTCGTGGTTATGACTCAGCCGCACATTGGGAACACTGGCGTCAATTTTGgtcagtttttccgttctcaacc--ttgggttttaacatatggtttctctag--------------------------------------

upper sequence: GLYMA06G15510.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ19894 (Selaginella moellendorffii), 5'ss of exon 3
GTATCAAGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTGgttagtttttattttctaattcaaatgagtcttgaatcgatgtggttggaagccatttgaaaactgtgttttggttcacttttttccag
|||||| || ||| | || ||||| ||||||||||||||||| ||| | |||||  | || || ||||||||||||||| | ||||||||| |||||||   |||| |  |   || || || |    | |  ||  |       | |                              
GTATCAGGAGATTATCACTGATCCGAGTTATGCTGGCCAGTTCGTGGTTATGACTCAACCGCACATTGGGAACACTGGCGTCAATTTTGgtcagtttttccgttctcaacc--ttgggttttaacataaagatgtctggtttttctag------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406343|gb|EV276158.1|EV276158
EST:     GTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTG                         ATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTT
genomic: GTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTGgttagttttt ... ttttttccagATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTT
EST: gi|213614361|gb|DB966963.1|DB966963
EST:     GTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTG                         ATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTT
genomic: GTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTGgttagttttt ... ttttttccagATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTT
EST: gi|298181786|gb|HO025961.1|HO025961
EST:     GTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTG                         ATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTT
genomic: GTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTGgttagttttt ... ttttttccagATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTT
EST: gi|19271025|gb|BM887281.1|BM887281
EST:     GTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTG                         ATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTT
genomic: GTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTGgttagttttt ... ttttttccagATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTT
EST: gi|16284806|gb|BI946280.1|BI946280
EST:     GTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTG                         ATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTG
genomic: GTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTGgttagttttt ... ttttttccagATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTT
EST: gi|298173478|gb|HO016814.1|HO016814
EST:     GTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTG                         ATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTT
genomic: GTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTGgttagttttt ... ttttttccagATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTT
EST: gi|16996720|gb|BM086092.1|BM086092
EST:     GTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTG                         ATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTT
genomic: GTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTGgttagttttt ... ttttttccagATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTT
EST: gi|16348135|gb|BI973730.1|BI973730
EST:     GTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTG                         ATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTT
genomic: GTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTGgttagttttt ... ttttttccagATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTT
EST: gi|15589927|gb|BI674543.1|BI674543
EST:     GTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTG                         ATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTT
genomic: GTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTGgttagttttt ... ttttttccagATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTT
EST: gi|209727965|gb|BW666685.1|BW666685
EST:     GTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTG                         ATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTT
genomic: GTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTGgttagttttt ... ttttttccagATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTT
EST: gi|16283929|gb|BI945815.1|BI945815
EST:     GTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTG                         ATGATGAGGAATCAATACAGTGTTTCCTTGGCTG-TCTTGGAATTAGAAGT
genomic: GTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTGgttagttttt ... ttttttccagATGATGAGGAATCAATACAGTGTTTCCTTG-CTGGTCTTGTAATTAGAAGT
EST: gi|19347243|gb|BM892123.1|BM892123
EST:     GTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTG                         ATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTT
genomic: GTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTGgttagttttt ... ttttttccagATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTT
EST: gi|16283309|gb|BI945483.1|BI945483
EST:     GTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTG                         ATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTT
genomic: GTTTGTGCTCATGACAAATCCACATATTGGGAACACTGGCATAAATTTTGgttagttttt ... ttttttccagATGATGAGGAATCAATACAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTT