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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCCATTATCTGATATAATCAAATTTGTCTTGTTTGCAAATTTCTCCATTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaaggcttttagtagcctataacattttgaaccctctttatagtaaactctagataatatttataataattattccttgaaataaaattgtcag

Basic information

species Glycine max
transcript GLYMA06G15280.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G15280.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g40090.4 (Oryza sativa), 5'ss of exon 3
TCTTCCATTATCTGATATAATCAAATTTGTCTTGTTTGCAAATTTCTCCATTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaaggcttttagtagcctataacattttgaaccctctttatagtaaactctagataatatttataataattattccttgaaataaaattgtcag
| | |||||  | ||  |  | ||||| ||||| |||||||| || || ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||      |    |||||  | |||   | |||    |   |    || |    | |    |||| ||  |   |  |    ||| |              
TTTACCATTGCCAGAACTCGTTAAATTCGTCTTTTTTGCAAACTTATCAATTGTTGGGATGAATGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgggaagagtaattttaa-atccttctatattc---aatgttagaatggagggcacatactaattttcgtttca--tgcctcttcag-------------

upper sequence: GLYMA06G15280.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g12490.1 (Oryza sativa), 5'ss of exon 3
TCTTCCATTATCTGATATAATCAAATTTGTCTTGTTTGCAAATTTCTCCATTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaaggcttttagtagcctataacattttgaaccctctttatagtaaactctagataatatttataataattattccttgaaataaaattgtcag
  | ||| |  | ||  |||| ||||||||||| ||||||||  | || ||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||| |    |||    | |||  ||| |||  ||      |   |||| | |    |  | ||| || || |  |  | || ||||                
CTTACCAGTGCCAGAACTAATAAAATTTGTCTTTTTTGCAAACCTATCAATTGTTGGGATGAATGTTAGTTTGATGTGGAACTCTGTTGGATTCTACCAGgtgaaga-aagtaactaagt--cctttaatgtt------cacttttagaattggatgcatatactaatt-tgctcctcatgcctttttcag----------

upper sequence: GLYMA06G15280.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os12g05780.3 (Oryza sativa), 5'ss of exon 3
TCTTCCATTATCTGATATAATCAAATTTGTCTTGTTTGCAAATTTCTCCATTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaaggc--ttttagtagcct-ataacattttgaaccctctttatagtaaact-ctagataatatttataataattattccttgaaataaaattgtcag
  | ||| || | ||| | || || |||||  | ||| | || || || |||||||| ||||||||||| || |||||||||||||| || || |||||||| |    | | |  || |||||||   ||  |||  ||    || |  |   | |||| ||| | |||  || |     |  | |||| |              
CTTACCAATACCAGATCTGATTAAGTTTGTGATCTTTTCGAACTTGTCAATTGTTGGAATGAATGTGAGCTTGATGTGGAACTCTGTGGGATTTTATCAGgttagcaaaggaccgttctagtagctagattccatcatgg---ctttaaactttcaactactaaacaatcctttt-----tcttcccttcag-------------

upper sequence: GLYMA06G15280.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os12g05830.1 (Oryza sativa), 5'ss of exon 3
TCTTCCATTATCTGATATAATCAAATTTGTCTTGTTTGCAAATTTCTCCATTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaaggc--ttttagtagcctataacattttgaaccctctttatagtaaactctagataatatttataataattattccttgaaataaaattgtcag
  | ||| |  | ||| | || ||||||||  | ||| | || || || |||||||| ||||||||||| || |||||||||||||| || || |||||||| |    | |    || |  |||| || |     |     | |     |   ||  |  | |   ||   |      || |||  |  |             
CTTACCACTGCCAGATCTGATTAAATTTGTGATCTTTTCGAACTTGTCGATTGTTGGAATGAATGTGAGCTTGATGTGGAACTCTGTGGGGTTTTATCAGgttagcaaaggatggttctgctagc-taaattccatcatggctttgaactttcaagtttcaaaagctaaagaatccttttgttctcttcag------------

upper sequence: GLYMA06G15280.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G147446_T01 (Zea mays), 5'ss of exon 3
TCTTCCATTATCTGATATAATCAAATTTGTCTTGTTTGCAAATTTCTCCATTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaaggcttttagtagcctataacattttgaaccctctttatagtaaactctagataatatttataataattattccttgaaataaaattgtcag
  | ||  || | ||| || | ||||||||  | ||| | || || || |||||||||||||||||||| || ||||||||||||||||| || ||||||||   |  |    |||||||||| |   | ||| ||   |||        |||  ||||     |||| ||  || |   |   | |              
CTTACCCCTAGCAGATCTAGTTAAATTTGTGATATTTTCGAACTTGTCAATTGTTGGGATGAATGTGAGCTTGATGTGGAACTCTGTTGGCTTTTATCAGgttggtg-agattttttagtagc-tgctatattatgcgaccttgaatcgttaacatcta-----tattcattttattcccttgctcag-------------

upper sequence: GLYMA06G15280.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G089630_T04 (Zea mays), 5'ss of exon 3
TCTTCCATTATCTGATATAATCAAATTTGTCTTGTTTGCAAATTTCTCCATTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaaggcttttagtagcctataa-cattttgaaccctctttatagtaaactctagataatatttataataattattccttgaaataaaattgtcag
||| || ||| ||||  || | ||||| | ||| ||||| ||  | || ||||||||||||||||| || || ||||||||||||||||| |||||||||||      |     ||   ||  ||||||  || | | |      ||| | |    |   ||   | | | |  |   | || |                  
TCTACCGTTACCTGAACTAGTAAAATTCGCCTTTTTTGCGAACCTGTCTATTGTTGGGATGAATGTAAGCTTGATGTGGAACTCTGTTGGATTCTATCAGgtgcagacagaaacttcgatattctataagtatatcggaa-----ttaaacttgtatactgacgctgtctgtcttgcctttttcag----------------

upper sequence: GLYMA06G15280.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G071378_T02 (Zea mays), 5'ss of exon 3
TCTTCCATTATCTGATATAATCAAATTTGTCTTGTTTGCAAATTTCTCCATTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaaggcttttagtagcctataacattttgaaccctctttatagtaaactctagataatatttataataattattccttgaaataaaattgtcag
  | ||  || | ||| || | ||||||||  | ||| | || || || |||||||||||||||||||| || |||||||||||||| || || ||||||||   |   |   ||||||||||   ||  || |  |||| |    || || |||    ||    ||| ||  || |   |   | |              
CTTACCCCTAGCAGATCTAGTTAAATTTGTGATATTTTCGAACTTGTCAATTGTTGGGATGAATGTGAGCTTGATGTGGAACTCTGTGGGCTTTTATCAGgttggt--gaaatttttagtagctgctataatatgcaaccttaa--attgttaacaactga----attcattctattcccttgctcag-------------

upper sequence: GLYMA06G15280.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 2
TCTTCCATTATCTGATATAATCAAATTTGTCTTGTTTGCAAATTTCTCCATTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaaggcttttagtagcctataa-cattttgaaccctctttatagtaaactctagataatatttataataattattccttgaaataaaattgtcag
| | |||||| | ||  || | || |||| ||| ||||||||  | || || || || ||||| || ||||| ||||||||||||||||| ||||||||||| |    |     ||| |||  ||||||  || ||| |     || |  ||| |  ||| ||  | | |||  |     || |                  
TTTACCATTACCAGAACTAGTAAAGTTTGCCTTTTTTGCAAACCTGTCGATCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcagaaactttggtattctataagtatattggag----ttaaacgtatatacta-atgctgtgtatcttgcccttttcag----------------

upper sequence: GLYMA06G15280.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0031g01860.t01 (Vitis vinifera), 5'ss of exon 3
TCTTCCATTATCTGATATAATCAAATTTGTCTTGTTTGCAAATTTCTCCATTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaaggcttttagtagcctataacattttgaaccctctttatagtaaactctagataatatttataataattattccttgaaataaaattgtcag
||| ||| |||||||  |  | | |||||| |||||||||||||| || |||||||| ||||| ||||||||||||||||||||||| || ||||||||||| | |||  ||   |    |   | |    |  |    |     |||  |       || ||  | ||||  |   | |  ||| |||      ||||||
TCTACCAGTATCTGAGCTTCTGAGATTTGTTTTGTTTGCAAATTTGTCAATTGTTGGAATGAACGTGAGTTTAATGTGGAACTCTGTGGGATTCTATCAGgtcagttttgggaactgctgactttttgttctccttttgctctcatattttttttcaaagttacaagttatgtt--ctttctcttcaaactttgatgtcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4313494|gb|AI460613.1|AI460613
EST:     GGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAG                         ATTGCTAAGCTGAGCATGATTCCAGTATCTTGCTTCCTGGAGGTTGTCTTG
genomic: GGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaa ... aaattgtcagATTGCTAAGCTGAGCATGATTCCAGTATCTTGCTTCCTGGAGGTTGTCTTG
EST: gi|151402112|gb|EV271925.1|EV271925
EST:     TTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAG                         ATTGCTAAGCTGAGCATGATTCCAGTATCTTGCTTCCTGGAGGTTGTCTTG
genomic: TTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaa ... aaattgtcagATTGCTAAGCTGAGCATGATTCCAGTATCTTGCTTCCTGGAGGTTGTCTTG