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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGTTACTAAAAGTGGGGATTCAAGAGTTGGTCTTGTGGGCTTCCCTTCAGTCGGCAAATCTACTCTACTGAATAAGTTGACCGGGACATTTTCTGAGgtatggaggtattccaggtgttataaatttccttctaatgttagtatattattgacctatcatctatttcttttctgtgtttgggtccttttggaaagtg...

Basic information

species Glycine max
transcript GLYMA06G15180.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G15180.2 (Glycine max), 5'ss of exon 3
lower sequence: AT4G39520.1 (Arabidopsis thaliana), 5'ss of exon 3
TGATGTTACTAAAAGTGGGGATTCAAGAGTTGGTCTTGTGGGCTTCCCTTCAGTCGGCAAATCTACTCTACTGAATAAGTTGACCGGGACATTTTCTGAGgtatggaggtatt-ccaggtgttataaatttccttctaatgttagtatattattgacctatcatctatttcttttctgtgtttgggtccttttggaaagtg
|||||| ||||||||||| ||||| |||||||| || || || || ||||| || || |||||||| ||| | || ||| |||| ||||||||||| ||||| || || |||    | |  |  | || ||||||    |  | ||| |||       |   | |||   | | ||  ||      |  || | |  | | 
TGATGTGACTAAAAGTGGAGATTCTAGAGTTGGACTGGTCGGATTTCCTTCGGTTGGAAAATCTACGCTATTAAACAAGCTGACTGGGACATTTTCCGAGgtttgtagttatcgttacgaatattgaacttcctttctcttgttgta-attggaattttgaaacctaccacgtatccatggcatcctatttctagttactt

upper sequence: GLYMA06G15180.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0031g01620.t01 (Vitis vinifera), 5'ss of exon 3
TGATGTTACTAAAAGTGGGGATTCAAGAGTTGGTCTTGTGGGCTTCCCTTCAGTCGGCAAATCTACTCTACTGAATAAGTTGACCGGGACATTTTCTGAGgtatggaggtattccaggtgttataaatttccttctaatgttagtatattattgacctatcatctatttcttttctgtgtttgggtccttttggaaagtg
|||||||||||||||||| ||||||||||||||||| || || ||||||||||| || || || || || || ||||| || || || || ||||||||||| || |    |||||    || | | ||   |    || |||    ||| || |  | ||   ||||| |||| ||| ||   |               
TGATGTTACTAAAAGTGGAGATTCAAGAGTTGGTCTGGTTGGTTTCCCTTCAGTTGGGAAGTCCACACTTCTAAATAAATTAACAGGCACTTTTTCTGAGgtttgaaatctttcca----ttgtgatttatat----atcttaaggaatttttaagttgtctgatattt-ttttatgttttacag---------------

upper sequence: GLYMA06G15180.2 (Glycine max), 5'ss of exon 3
lower sequence: PP1S26_115V6.1 (Physcomitrella patens), 5'ss of exon 3
TGATGTTACTAAAAGTGGGGATTCAAGAGTTGGTCTTGTGGGCTTCCCTTCAGTCGGCAAATCTACTCTACTGAATAAGTTGACCGGGACATTTTCTGAGgtatggaggtattccaggtgttataaatttccttctaatgttagt---atattattgacctatcatctatttcttt--tctgtgtttgggtccttttggaaagtg
|||||| ||||||||||| |||||| ||||||| ||||| || || || || || ||||||||||| || || || ||| | || || || ||||||||||| ||  |  | |||   | | |    | |      ||| || ||    |  | ||  | |||||   | ||      ||  ||||   | |    ||||     
TGATGTCACTAAAAGTGGAGATTCACGAGTTGGGCTTGTTGGTTTTCCATCTGTTGGCAAATCTACCCTTCTCAACAAGCTCACAGGAACCTTTTCTGAGgtttgccgtcaatcctact-tgagctgtcttggcacaattttggttccgttatgttaccgtatcactgacttggacagtccctgttccag-cgacatggatg---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6454220|gb|AW184833.1|AW184833
EST:     CAGTCGGCAAATCTACTCTACTGAATAAGTTGACCGGGACATTTTCTGAG                         GTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACA
genomic: CAGTCGGCAAATCTACTCTACTGAATAAGTTGACCGGGACATTTTCTGAGgtatggaggt ... ttgtttatagGTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACA
EST: gi|192294592|gb|FG986441.1|FG986441
EST:     CAGTCGGCAAATCTACTCTACTGAATAAGTTGACCGGGACATTTTCTGAG                         GTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACA
genomic: CAGTCGGCAAATCTACTCTACTGAATAAGTTGACCGGGACATTTTCTGAGgtatggaggt ... ttgtttatagGTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACA
EST: gi|254325516|gb|GR838397.1|GR838397
EST:     CAGTCGGCAAATCTACTCTACTGAATAAGTTGACCGGGACATTTTCTGAG                         GTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACA
genomic: CAGTCGGCAAATCTACTCTACTGAATAAGTTGACCGGGACATTTTCTGAGgtatggaggt ... ttgtttatagGTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACA