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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGAGCAGAAAGCTGTGATGGGATTTGGAATTCTTAATGGAATATCAATTGGTCTTTTAAATTTGAGCCTAGGCTTCAATTCTGTTGGCTTTTATCAGgtgatttttttctttctcagctatatattttgcatgtaatattttgatttgtgttgtttaagttgtttttcaagtttttttgaacaagctctattatatttgcattcag

Basic information

species Glycine max
transcript GLYMA06G14980.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G14980.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g07310.3 (Oryza sativa), 5'ss of exon 3
TTTTGAGCAGAAAGCTGTGATGGGATTTGGAATTCTTAATGGAATATCAATTGGTCTTTTAAATTTGAGCCTAGGCTTCAATTCTGTTGGCTTTTATCAGgt-gatttttttctttctcagctat-----atattttgcatgtaatattttgatttgtgttgtttaagttgtttttcaagtttttttgaacaagctctattatatttgcattcag
||||||    |   |||| |||||||||||  | || ||||| || |||||||||||| | || ||||| ||||| |||||||||||||| || || ||||| |   || || || ||| |   |     | | ||  || |  ||  | || |  |||||||      |||  ||| | || ||  | ||     ||  ||             
TTTTGATGCAAGGACTGTCATGGGATTTGGTGTGCTCAATGGCATTTCAATTGGTCTTCTCAACTTGAGTCTAGGTTTCAATTCTGTTGGTTTCTACCAGgtaggcattgtttttgctctgtcctgatcaaaacttaacaggctatcatctggta-gtgttgtacttaatgtccttctaattgttg-gtacccctgctgcta-------------

upper sequence: GLYMA06G14980.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G063511_T02 (Zea mays), 5'ss of exon 3
TTTTGAGCAGAAAGCTGTGATGGGATTTGGAATTCTTAATGGAATATCAATTGGTCTTTTAAATTTGAGCCTAGGCTTCAATTCTGTTGGCTTTTATCAGgtgatttttttctttctcagctatatattttgcatgtaatattttgatttgtgttgtttaagttgtttttcaagtttttttgaacaagctctattatatttgcattcag
||||||    | | |||| |||||||||||| | ||||||||||| || ||||| ||  | || ||||| || |||||||| |||||||| ||||| ||||| ||     | | |    |   ||  | |  |||  |  ||||    ||   |  || |   || |  |  | || |   |     | |  | |  |   | | |   
TTTTGATTCAAGAACTGTCATGGGATTTGGAGTACTTAATGGAATCTCCATTGGGCTCCTCAACTTGAGTCTTGGCTTCAACTCTGTTGGGTTTTACCAGgt-atagacatatcttaatgtagtacttgtaccattcagaatttc---ttagatatttcactctggtcctgcaattatcacgggtctgtt--actgcaccagtaat---

upper sequence: GLYMA06G14980.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 4
TTTTGAGCAGAAAGCTGTGATGGGATTTGGAATTCTTAATGGAATATCAATTGGTCTTTTAAATTTGAGCCTAGGCTTCAATTCTGTTGGCTTTTATCAGgtgatttttttctttctcagc--tatatatt-ttgcatgt--aatattttgatttgtgttgtttaagttgtttttcaagtt-----tttttgaac--aagctctattatatttgcattcag-
 |||||    |||||||| ||||| ||||| ||||| |||||||| || ||||| ||  | ||| ||||||| || |||||||||||||| || |||||||| |  ||  |  |||| |    |   || | || |||||  ||  ||| |   | ||   ||| ||| |||| |||||       ||| |||||  | | | |||| | | || ||||   
ATTTGATGCAAAAGCTGTTATGGGTTTTGGCATTCTAAATGGAATCTCGATTGGACTCCTGAATCTGAGCCTTGGTTTCAATTCTGTTGGTTTCTATCAGgtaaaattaattcttctgaatattccctactattacatgttcaacttttggtcctttgccatttcagt-gtttctcaagagagtggtttctgaacttatgttatattgtttgtgtattccag

upper sequence: GLYMA06G14980.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S123_22V6.1 (Physcomitrella patens), 5'ss of exon 3
TTTTGAGCAGAAAGCTGTGATGGGATTTGGAATTCTTAATGGAATATCAATTGGTCTTTTAAATTTGAGCCTAGGCTTCAATTCTGTTGGCTTTTATCAGgtgatttttttctttctcagctatatattttgcatgtaatattttgatttgtgttgtttaagttgtttttcaagtttttttgaaca----agctctattatatttgcattcag--------------------------------------------------------------------
||| ||        |  || | || ||||  || || || ||||| || || ||  |  ||||||||||| |||| ||||| |||||||| |||||||||||   ||     ||    |  || |  |  |   |||    ||  |||  |        ||    |     ||  || |   ||      || ||| |  | ||   ||||                                                                      
TTTCGACTCACGGACACTGTTTGGGTTTGCTATACTGAACGGAATTTCCATCGGCTTACTAAATTTGAGCTTAGGTTTCAACTCTGTTGGATTTTATCAGgtatgttgaagattgtaaatgtaaaggtggttactgttgggttaggataggaaagcaaaaaaagatcaaaaaaaattctaccaattcatcagttctctgctgttacgattcctggtctgctgcggtgaactggaactgagtgtcagggagtccgagtaatatctttacaactttgtcccag