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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGAGCAGAAAGCTGTAATTGGATTTGGGATTTTAAATGGGATCTCAATTGGACTTTTAAATTTGAGCCTGGGTTTCAATTCTGTTGGCTTCTATCAAgtatgtttattatggttctgtttttctcacgtgttcatttgattattgttgactctgaacatctctatgatattccttttcag

Basic information

species Glycine max
transcript GLYMA06G14970.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G14970.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G116053_T01 (Zea mays), 5'ss of exon 3
TTTTGAGCAGAAAGCTGTAATTGGATTTGGGATTTTAAATGGGATCTCAATTGGACTTTTAAATTTGAGCCTGGGTTTCAATTCTGTTGGCTTCTATCAAgtatgt----ttattatggttctgtttttctcacgt----gttcatttgattattgttgactctgaacatctctatgatattccttttcag-----------
||| ||    |   |||| || ||||| ||  |  | ||||| || || ||||||||| | || ||||| |||||||||||||||||||| |||||||| |||||      | || || || | ||   |  |  |    ||| ||| | | |    || | | ||     | |  |  | || |     |           
TTTCGATGCAAGGACTGTCATGGGATTCGGAGTGCTCAATGGCATATCTATTGGACTTCTTAACTTGAGTCTGGGTTTCAATTCTGTTGGTTTCTATCAGgtatgcatcccttttctgtttgtattcagccaaacttaaggtttattgggtgacc--tggcaccgacttcttattcggcactcatagcatgacatgttatca

upper sequence: GLYMA06G14970.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G081848_T05 (Zea mays), 5'ss of exon 3
TTTTGAGCAGAAAGCTGTAATTGGATTTGGGATTTTAAATGGGATCTCAATTGGACTTTTAAATTTGAGCCTGGGTTTCAATTCTGTTGGCTTCTATCAAgtatgtttattatggttctgtt--tttctcacgtgttcatttgattat--tgttgactctg-aacatctctatgatattccttttcag-------------
||| ||    |   | || || ||||| ||  |  | ||||| || || ||||||||| |||| |||||  ||||||||||||||||||| |||||||| |||    |    |  | |   |  |||     || |||||   |  ||   ||| | |  |  |  |  |  |||| ||| | ||| |             
TTTCGATGCAAGGACCGTCATGGGATTCGGAGTGCTCAATGGCATATCTATTGGACTTCTAAACTTGAGTTTGGGTTTCAATTCTGTTGGTTTCTATCAGgtacacatccctttttccctctaattttatttgtattcatccaaacataaggtttattgggtgatctagcactgat-ttcttattcggcgccaataacatg

upper sequence: GLYMA06G14970.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0067g02970.t01 (Vitis vinifera), 5'ss of exon 4
TTTTGAGCAGAAAGCTGTAATTGGATTTGGGATTTTAAATGGGATCTCAATTGGACTTTTAAATTTGAGCCTGGGTTTCAATTCTGTTGGCTTCTATCAAgtatgttta----ttatggttctgtttttct--cacgtgttca---tttgattatt-gttgactctgaacatctctatgatattccttttcag----------------------------
 |||||    |||||||| || || ||||| ||| ||||||| ||||| ||||||||  | ||| ||||||| ||||||||||||||||| |||||||| |||   |||    || ||  | |    | ||   || ||||||   |||| |  || |     || |    |||| |     |   || | |                             
ATTTGATGCAAAAGCTGTTATGGGTTTTGGCATTCTAAATGGAATCTCGATTGGACTCCTGAATCTGAGCCTTGGTTTCAATTCTGTTGGTTTCTATCAGgtaaaattaattcttctgaatattccctactattacatgttcaacttttggtcctttgccatttcagtgtttctcaagagagtggtttctgaacttatgttatattgtttgtgtattccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254314907|gb|GR829900.1|GR829900
EST:     TTGGACTTTTAAATTTGAGCCTGGGTTTCAATTCTGTTGGCTTCTATCAA                         ATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGACCATATTT
genomic: TTGGACTTTTAAATTTGAGCCTGGGTTTCAATTCTGTTGGCTTCTATCAAgtatgtttat ... tccttttcagATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGACCATATTT
EST: gi|22524332|gb|BU083143.1|BU083143
EST:     CTGGGTTTCAATTCTGTTGGCTTCTATCAA                         ATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGATTATATTT
genomic: CTGGGTTTCAATTCTGTTGGCTTCTATCAAgtatgtttat ... tccttttcagATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGACCATATTT
EST: gi|254324663|gb|GR834088.1|GR834088
EST:     TTGGACTTTTAAATTTGAGCCTGGGTTTCAATTCTGTTGGCTTCTATCAA                         ATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGACCATATTT
genomic: TTGGACTTTTAAATTTGAGCCTGGGTTTCAATTCTGTTGGCTTCTATCAAgtatgtttat ... tccttttcagATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGACCATATTT