1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGATCCAAAGTAAATATGGTTATCACAGACTATTGCATGCCAGGGATGACAGGCTACGAGCTACTTAAGAAAATCAAGgtatttcagctttttattcttttttactcattagatgcatccaatcatgtaatattaatagcaacaacaaactgcattcttttttaaacag
species | Glycine max |
transcript | GLYMA06G14750.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTATTGCGTGCCAGGGATGACAGGCTACGAGCCTACTTAAGAAAATCGAG GAATCGTCGGTAACGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAACEST: gi|298177051|gb|HO023412.1|HO023412
genomic: CTATTGCATGCCAGGGATGACAGGCTACGAGC-TACTTAAGAAAATCAAGgtatttcagc ... ttttaaacagGAATCGTCGGTAACGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAAC
EST: ACTATTGCATGCCAGGGATGACAGGCTACGAGCTACTTAAGAAAATCAAG GAATCGTCGGTAACGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAACEST: gi|151406198|gb|EV276013.1|EV276013
genomic: ACTATTGCATGCCAGGGATGACAGGCTACGAGCTACTTAAGAAAATCAAGgtatttcagc ... ttttaaacagGAATCGTCGGTAACGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAAC
EST: ACTATTGCATGCCAGGGATGACAGGCTACGAGCTACTTAAGAAAATCAAG GAATCGTCGGTTACGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAACEST: gi|192299552|gb|FG992580.1|FG992580
genomic: ACTATTGCATGCCAGGGATGACAGGCTACGAGCTACTTAAGAAAATCAAGgtatttcagc ... ttttaaacagGAATCGTCGGTAACGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAAC
EST: ACTATTGCATGCCAGGGATGACAGGCTACGAGCTACTTAAGAAAATCAAG GAATCGTCGGTAACGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAAC
genomic: ACTATTGCATGCCAGGGATGACAGGCTACGAGCTACTTAAGAAAATCAAGgtatttcagc ... ttttaaacagGAATCGTCGGTAACGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATCCAAAGTAAATATGGTTATCACAGACTATTGCATGCCAGGGATGACAGGCTACGAGCTACTTAAGAAAATCAAGgtatttcagctttttattcttttttactcattagatgcatccaatcatgtaatattaatagcaacaacaaactgcattcttttttaaacag
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