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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGGTATCAAAATGATGATCTTTTATACCCACTGGCCATGCTTCCACCAAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGgtatggatttattctatgtgcactctatatgtgatcattgcattgctatagtttgtttacactagacagctttatttgctctattggacatagagacatc...

Basic information

species Glycine max
transcript GLYMA06G14590.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G14590.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g07390.1 (Oryza sativa), 5'ss of exon 3
TGGTGGTATCAAAATGATGATCTTTTATACCCACTGGCCATGCTTCCACCAAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGgtatggatttattctatgtgcactctatatgtgatcat----tgcattgctatagtttgtttacactagacagctttatttgctctattggacatagagacatc
||||| ||  | |||| ||| ||  ||   || ||||     ||| | ||||||  |   ||||| || |||||| ||||||||||||||||||| |||||||||  ||      || ||     |  |     | ||    |  || || ||  ||| |   ||   ||  |||| |     | |||  |   |||||  |  
TGGTGTTACAAGAATGGTGACCTCGTACGACCTCTGGTGGCTCTTGCTCCAAAAGAAATTCCACCGTTTTGGCATGCAATATTCATCATTTTGGTGAATGgtatgttttctcctcatatgatgcttgaacacatttatgttttagatcgc-atgttttctcctcatatgat-gcttgaacacatttat--gttttagagctaga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37994656|gb|CF806311.1|CF806311
EST:     AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATG                         ATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
genomic: AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGgtatggattt ... gactttttagATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
EST: gi|9819498|gb|BE555011.1|BE555011
EST:     AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATG                         ATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
genomic: AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGgtatggattt ... gactttttagATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
EST: gi|193336346|gb|FK297686.1|FK297686
EST:     AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATG                         ATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
genomic: AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGgtatggattt ... gactttttagATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
EST: gi|208263683|gb|GE063859.1|GE063859
EST:     AAAAACACCACCACCTTTCTGGCATACA-TATTCATCATTTTGGTTAATG                         ATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
genomic: AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGgtatggattt ... gactttttagATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
EST: gi|193391937|gb|FK355618.1|FK355618
EST:     AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATG                         ATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
genomic: AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGgtatggattt ... gactttttagATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
EST: gi|208089129|gb|GD887006.1|GD887006
EST:     AAAAACACCACCACCTTTCTGGCATACA-TATTCATCATTTTGGTTAATG                         ATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
genomic: AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGgtatggattt ... gactttttagATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
EST: gi|193342516|gb|FK306776.1|FK306776
EST:     AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATG                         ATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
genomic: AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGgtatggattt ... gactttttagATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
EST: gi|193417126|gb|FK384582.1|FK384582
EST:     AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATG                         ATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
genomic: AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGgtatggattt ... gactttttagATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
EST: gi|9819411|gb|BE554924.1|BE554924
EST:     AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATG                         ATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
genomic: AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGgtatggattt ... gactttttagATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
EST: gi|193323640|gb|FK290492.1|FK290492
EST:     AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATG                         ATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
genomic: AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGgtatggattt ... gactttttagATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
EST: gi|51342137|gb|CO983398.1|CO983398
EST:     AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATG                         ATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
genomic: AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGgtatggattt ... gactttttagATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT