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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATTACAAAGTCCTGATGTTGGGCCGTATTTTGGGAGGTATTGCCACTTCACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAGgtgaggaacaattttttgcttttaaaagttatcttctgtttattatgaatatcttctctggatatgttgattttaagacatgcaggaagttcctcataat...

Basic information

species Glycine max
transcript GLYMA06G13760.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G13760.2 (Glycine max), 5'ss of exon 3
lower sequence: AT4G27720.1 (Arabidopsis thaliana), 5'ss of exon 3
TCATTACAAAGTCCTGATGTTGGGCCGTATTTTGGGAGGTATTGCCACTTCACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAGgtgaggaacaattttttgcttttaaaagttatcttctgtttattatgaatatcttctctggatatgttgattttaagacatgcaggaagttcctcataat
||| || || ||  ||||| | |||||| | |||||||| ||||| ||||| |||||||||||  |||||||||| ||||| ||||| ||||||   ||||| | |||   ||| |    | | ||  |  |   |||     | |   |||   ||  |  | | ||  |  | |   ||||||               
TCAATATAAGGTTTTGATGGTAGGCCGTGTCTTGGGAGGCATTGCTACTTCCCTTCTGTTTTCGTCATTTGAATCATGGCTAGTTGCTGAGCACAATAAGgtaaagaaaggtttatgctgtattaagctcttaagctgccatgtttatttataaacttagtgttt-ttattcgtgatgtatgcag---------------

upper sequence: GLYMA06G13760.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0098g01290.t01 (Vitis vinifera), 5'ss of exon 3
TCATTACAAAGTCCTGATGTTGGGCCGTATTTTGGGAGGTATTGCCACTTCACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAGgtgaggaacaattttttgcttttaaaagttatcttctgtttattatga-atatcttctctggatatgttgattttaagacatgcaggaagttcctcataat
||| |||| | |  | ||| |||| ||| | ||||||||||| |||||||| || ||||||||||||||||| || ||||||||||||||||||  |||||||||      |   ||  |  | ||  |||   | | ||  |  | | | || |    || || |||| | || |  |  ||    |     |  || | 
TCAGTACAGAATTTTAATGGTGGGGCGTGTGTTGGGAGGTATCGCCACTTCTCTCCTGTTTTCAGCATTTGAGTCATGGCTTGTTGCCGAGCACAACAAGgtgagatgttgtcgctttgtccttaatcttaaaatatattagtgctaacaaatttatcttgcatttgttaaattgattaactgtttaattgggcggatca-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209711297|gb|BW683622.1|BW683622
EST:     CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAG                         AGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
genomic: CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAGgtgaggaaca ... acatcgtcagAGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
EST: gi|15813823|gb|BI786098.1|BI786098
EST:     CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAG                         AGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAAGCTATATTT
genomic: CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAGgtgaggaaca ... acatcgtcagAGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
EST: gi|298175985|gb|HO015390.1|HO015390
EST:     CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAG                         AGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTA
genomic: CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAGgtgaggaaca ... acatcgtcagAGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTA
EST: gi|254342363|gb|GR858525.1|GR858525
EST:     CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAG                         AGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
genomic: CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAGgtgaggaaca ... acatcgtcagAGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
EST: gi|209715234|gb|BW668562.1|BW668562
EST:     CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAG                         AGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
genomic: CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAGgtgaggaaca ... acatcgtcagAGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
EST: gi|192322278|gb|FK014519.1|FK014519
EST:     CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAG                         AGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
genomic: CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAGgtgaggaaca ... acatcgtcagAGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
EST: gi|213601393|gb|DB968709.1|DB968709
EST:     CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAG                         AGGGGCTTTGATCAACAGTGGCTATCATTAACATTCTCAAAGGCTATATTT
genomic: CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAGgtgaggaaca ... acatcgtcagAGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
EST: gi|18041240|gb|BM309534.1|BM309534
EST:     CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAG                         AGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
genomic: CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAGgtgaggaaca ... acatcgtcagAGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
EST: gi|209709210|gb|BW657179.1|BW657179
EST:     CACTTCTGTTTTCGGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAG                         AGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
genomic: CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAGgtgaggaaca ... acatcgtcagAGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
EST: gi|207828966|gb|GD797689.1|GD797689
EST:     CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAG                         AGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
genomic: CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAGgtgaggaaca ... acatcgtcagAGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
EST: gi|193598639|gb|FK554091.1|FK554091
EST:     CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAG                         AGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
genomic: CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAGgtgaggaaca ... acatcgtcagAGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
EST: gi|193537685|gb|FK497618.1|FK497618
EST:     CACTTCTGTTTTCAGCATTTGAATCATGGCTTGTTGCCGAGCACTTCAAG                         AGGGGCTTTGATCAACAATGGCTGTCATTAACATTCTCTAAGGCTATATTT
genomic: CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAGgtgaggaaca ... acatcgtcagAGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
EST: gi|16106397|gb|BI894137.1|BI894137
EST:     CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAG                         AGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
genomic: CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAGgtgaggaaca ... acatcgtcagAGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
EST: gi|193466929|gb|FK430334.1|FK430334
EST:     CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAG                         AGGGGCTTTGATCAAC
genomic: CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAGgtgaggaaca ... acatcgtcagAGGGGCTTTGATCAAC
EST: gi|19453079|gb|BM954489.1|BM954489
EST:     CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAG                         AGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
genomic: CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAGgtgaggaaca ... acatcgtcagAGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
EST: gi|213587653|gb|DB971376.1|DB971376
EST:     CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAG                         AGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
genomic: CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAGgtgaggaaca ... acatcgtcagAGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
EST: gi|298198016|gb|HO039555.1|HO039555
EST:     CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAG                         AGGGGCTT-GATCAACAATGGCTATCATTAACATTCTCAAAGG
genomic: CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAGgtgaggaaca ... acatcgtcagAGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGG
EST: gi|209701782|gb|BW667407.1|BW667407
EST:     CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAG                         AGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
genomic: CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAGgtgaggaaca ... acatcgtcagAGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
EST: gi|209715146|gb|BW665621.1|BW665621
EST:     CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAG                         AGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT
genomic: CACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAGgtgaggaaca ... acatcgtcagAGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTT