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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGGACAGATATCAGATTAACCTCTCCTCAGCTCTGCAGACAAGCCCTCTACAAACTCGCTCTCAAAAATCTCGCCATCCAAACCGTTTCCCCAAGgcaccttcaccttctccttttcaaattatttttttcactattagcaagcattatagaattattactgtgctctttctggttttggtatttcag

Basic information

species Glycine max
transcript GLYMA06G13260.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213619750|gb|DB967372.1|DB967372
EST:     CTCTACAAACTCGCTCTCAAAAATCTCGCCATCCAAACCGTTTCCCCAAG                         TGATACGAGAAATCCTTTTGTGGA
genomic: CTCTACAAACTCGCTCTCAAAAATCTCGCCATCCAAACCGTTTCCCCAAGgcaccttcac ... ggtatttcagTGATACGAGAAATCCTTTTGTGGA
EST: gi|14990712|gb|BI316385.1|BI316385
EST:     CTCTACAAACTCGCTCTCAAAAATCTCGCCATCCAAACCGTTTCCCCAAG                         TGATACGAGAAATCCTTTTGTGGAATATGCGATTCATTATTCCGTGGCTGC
genomic: CTCTACAAACTCGCTCTCAAAAATCTCGCCATCCAAACCGTTTCCCCAAGgcaccttcac ... ggtatttcagTGATACGAGAAATCCTTTTGTGGAATATGCGATTCAGTATTCCGTGGCTGC
EST: gi|213592699|gb|DB955829.1|DB955829
EST:     CTCTACAAACTCGCTCTCAAAAATCTCGCCATCCAAACCGTTTCCCCAAG                         TGATACGAGAAATCCTTTTGTGGAATATGCGATTCAGTATTCCGTGGCTGC
genomic: CTCTACAAACTCGCTCTCAAAAATCTCGCCATCCAAACCGTTTCCCCAAGgcaccttcac ... ggtatttcagTGATACGAGAAATCCTTTTGTGGAATATGCGATTCAGTATTCCGTGGCTGC
EST: gi|298197323|gb|HO044802.1|HO044802
EST:     CTCCACAAACTCGCTCTCAAAAATCTCGCCATCCAAACCGTTTCCCCAAG                         TGATACGAGAAATCCTTTTGTGGAATATGCGATTCAGTATTCCGTGGCTGC
genomic: CTCTACAAACTCGCTCTCAAAAATCTCGCCATCCAAACCGTTTCCCCAAGgcaccttcac ... ggtatttcagTGATACGAGAAATCCTTTTGTGGAATATGCGATTCAGTATTCCGTGGCTGC
EST: gi|151395244|gb|EV265115.1|EV265115
EST:     CTCTACAAACTCGCTCTCAAAAATCTCGCCATCCAAACCGTTTCCCCAAG                         TGATACGAGAAATCCTTTTGTGGAATATGCGATTCAGTATTCCGTGGCTGC
genomic: CTCTACAAACTCGCTCTCAAAAATCTCGCCATCCAAACCGTTTCCCCAAGgcaccttcac ... ggtatttcagTGATACGAGAAATCCTTTTGTGGAATATGCGATTCAGTATTCCGTGGCTGC
EST: gi|22931632|gb|BU548771.1|BU548771
EST:     CTCTACAAACTCGCTCTCAAAAATCTCGCCATCCAAACCGTTTCCCCAAG                         TGATACGAGAAATCCTTTTGTGGAATATGCGATTCAGTATTCCGTGGCTGC
genomic: CTCTACAAACTCGCTCTCAAAAATCTCGCCATCCAAACCGTTTCCCCAAGgcaccttcac ... ggtatttcagTGATACGAGAAATCCTTTTGTGGAATATGCGATTCAGTATTCCGTGGCTGC
EST: gi|14990664|gb|BI316337.1|BI316337
EST:     CTCTACAAACTCGCTCTCAAAAATCTCGCCATCCAAACCGTTTCCCCAAG                         TGATACGAGAAATCCTTTTGTGGAATATGCGATTCATTATTCCGTGGCTGC
genomic: CTCTACAAACTCGCTCTCAAAAATCTCGCCATCCAAACCGTTTCCCCAAGgcaccttcac ... ggtatttcagTGATACGAGAAATCCTTTTGTGGAATATGCGATTCAGTATTCCGTGGCTGC