1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAGgtgagtgtaactcatacatataagttctgcacagttcatgtacatttgctttattgcagggagagtatgatagtttgatgcatagctcttttatgattat...
species | Glycine max |
transcript | GLYMA06G13210.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAG GAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGGEST: gi|151394500|gb|EV264371.1|EV264371
genomic: GGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAGgtgagtgtaa ... ctataattagGAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGG
EST: GGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAG GAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGGEST: gi|151410847|gb|EV280662.1|EV280662
genomic: GGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAGgtgagtgtaa ... ctataattagGAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGG
EST: GGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAG GAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGGEST: gi|192325742|gb|FK015099.1|FK015099
genomic: GGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAGgtgagtgtaa ... ctataattagGAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGG
EST: GGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAG GAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGG
genomic: GGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAGgtgagtgtaa ... ctataattagGAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAGgtgagtgtaactcatacatataagttctgcacagttcatgtacatttgctttattgcagggagagtatgatagtttgatgcatagctcttttatgattat
- - - - - - AAGCTG
- - - - - - - GCTGTT