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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAAGAGGTGTTTTGGTTGAAGATGCTTGGGCAATAGCAATGCGGTATCTATCATCATACTTCTTGATTGACATTCTTGCCGTTCTTCCCCTCCCACAGgtaaggaaattctttctgctgttggagtttttgtctttcatcttttgaacatccacatcccagtaatggttgaagaactatgggttgatgagtttgtgca...

Basic information

species Glycine max
transcript GLYMA06G13200.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G13200.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0050g02560.t01 (Vitis vinifera), 5'ss of exon 3
TGGAAGAGGTGTTTTGGTTGAAGATGCTTGGGCAATAGCAATGCGGTATCTATCATCATACTTCTTGATTGACATTCTTGCCGTTCTTCCCCTCCCACAGgtaaggaaattctttctgctgttggagtttttgtctttcatcttttgaacatccacatcccag--taatggttgaagaactatgggttgatgagtttgtgca
||||||||||||| | || |||||| ||||||||||||||| | | ||| | || || |||||| | || ||||| || || |||||||||||||||||||||||||||   ||||||| |   || | ||  ||    |   ||| ||  |     | | ||  |        |  || |      || |  |    |   
TGGAAGAGGTGTTCTAGTAGAAGATTCTTGGGCAATAGCAAGGAGATATTTGTCCTCGTACTTCCTAATCGACATCCTCGCTGTTCTTCCCCTCCCACAGgtaaggaaaacttttctgcagccagaatgttcttcccatagtattttaaggtttggttgcaaggctgccaaggcataaagtgcccactgttaggccaata--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21675872|gb|BQ628223.1|BQ628223
EST:     TATCATCATACTTCTTGATTGACATTCTTGCCGTTCTTCCCCTCCCACAG                         GTGGCAATTCTAATTATCATTCCAAAGTTGAGTGGCTCTGAATCACTGAAT
genomic: TATCATCATACTTCTTGATTGACATTCTTGCCGTTCTTCCCCTCCCACAGgtaaggaaat ... atattggtagGTGGCAATTCTAATTATCATTCCAAAGTTGAGTGGCTCTGAATCACTGAAT