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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGCAGATCTTGGTGGCACAGAGATAGATTTGAGATTTGCCAGCTCTAAGGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCTGATGgtgagtattgagtttgcctatttttctttctccatcttagctttccagagacaaggagaataaaattgaaacagaaagaacaatgaaacttctaggtggttcttccatttattgcttgctttatatgataacttttttactatacatctatacag

Basic information

species Glycine max
transcript GLYMA06G12760.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G12760.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G77090.1 (Arabidopsis thaliana), 5'ss of exon 3
ATAGCAGATCTTGGTGGCACAGAGATAGATTTGAGATTTGCCAGCTCTAAGGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCTGATGgtgagtattgagtttgcctatttttctttctccatcttagctttccagag--acaaggagaataaaattgaaacagaaagaacaatgaaacttctaggtggttcttccatttat-tgcttgctttatatgataacttttttactatacatctatacag
|| || |||||||||||||| ||||| || ||||||||||| ||  |||| ||||| ||||||| ||| ||||| |||||||||||||||||  | ||| || ||  |||  | ||| ||||     |||  || |||  || |   |||  | |  |  |||  |||     |         | |   |||  ||| | | |     |||| | || |    |||||                              
ATCGCTGATCTTGGTGGCACCGAGATTGACTTGAGATTTGCTAGTCCTAAAGAAGGCCGTTTGTCTGTTATTGTAGCTCCTGTTCTTAGATTTGCAGATAgtaag--ttgtctctgc-tattaaagattcatcaactttactcttttgagttatataggcaatgcaatcttgtc--------tatttgtactcgtagattgattg---atttgtgtgttccacttatacag---------------------------

upper sequence: GLYMA06G12760.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0001g15360.t01 (Vitis vinifera), 5'ss of exon 3
ATAGCAGATCTTGGTGGCACAGAGATAGATTTGAGATTTGCCAGCTCTAAGGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCTGATGgtgagtattgagtttgcctatttttctttctccatcttagctttccagagacaaggagaataaaattgaaacagaaagaacaatgaaacttctaggtggttcttccatttattgcttgctttatatgataacttttt--tactatacatctatacag-----
|| |||||||| ||||| |||||||| |||||||| |||||||  ||||||||||| ||||| |||||||||||||| || ||||| |||||  | ||  || ||| |     |  |  || ||   ||    | |||  |     || |   ||||   |  || |||||   |     |||  |   ||| |  ||||        |  |  || || | | ||  | | || ||   |   |    ||||   |     
ATTGCAGATCTAGGTGGGACAGAGATTGATTTGAGGTTTGCCAATTCTAAGGAAGGGCGTTTATTTGTCATTGTTGCCCCAGTTCTCAGATTTGCAGACAgtaagtttc----tgacagatcttgtatttaagaccttgaca----agtggacaggaatcttgaaatgaaatgcagttctcaagtagttttcca--tggtgaacttggt--tcactagcctcagatattcatttcttatcatagtgttgctatgatgtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22932074|gb|BU549213.1|BU549213
EST:     GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCTGATG                         ATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
genomic: GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCTGATGgtgagtattg ... atctatacagATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
EST: gi|120529314|gb|EH257448.1|EH257448
EST:     GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCTGATG                         ATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA
genomic: GGAAGGACGTTTGTTTGTCATTGTTGCTCCTGTTCTTAGATTCTCTGATGgtgagtattg ... atctatacagATCTTGGTGACAATGCTACAATAGAAAAAATTGGACCTCCAGAGAAAGTGA