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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAAAACATCAATCAGAACTTTTCCTTCGTCAGCTGAAATAGTACCTGAACCACTGGGTGTTGTGTTGGTCATCTCTGCATGGAACTATCCAATTTgtatgttaataaatatttacttaaacttgagtttttttatatatactttgagttgacattttcagccatttctgataagttattctctgtctgtattgccag

Basic information

species Glycine max
transcript GLYMA06G12010.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209699810|gb|BW661120.1|BW661120
EST:     TGAACCACTGGGTGTTGTGTTGGTCATCTCTGCATGGAACTATCCAATTT                         TGTTGTCTCTTGATCCAGTCGTTGGAGCTATAGCTGCTGGGAATGCTGTGG
genomic: TGAACCACTGGGTGTTGTGTTGGTCATCTCTGCATGGAACTATCCAATTTgtatgttaat ... gtattgccagTGTTGTCTCTTGATCCAGTCGTTGGAGCTATAGCTGCTGGGAATGCTGTGG
EST: gi|213616764|gb|DB971261.1|DB971261
EST:     TGAACCACTGGGTGTTGTGTTGGTCATCTCTGCATGGAACTATCCAATTT                         TGTTGTCTCTTGATCCAGTCGTTGGAGCTATAGCTGCTGGGAATGCTGTGG
genomic: TGAACCACTGGGTGTTGTGTTGGTCATCTCTGCATGGAACTATCCAATTTgtatgttaat ... gtattgccagTGTTGTCTCTTGATCCAGTCGTTGGAGCTATAGCTGCTGGGAATGCTGTGG
EST: gi|254319120|gb|GR828848.1|GR828848
EST:     GGAACTATCCAATTT                         TGTTTGTCTCTTGATCCAGTCGTTGGAGCTATAGCTGCTGGGAATGCTGTG
genomic: GGAACTATCCAATTTgtatgttaat ... gtattgccagTG-TTGTCTCTTGATCCAGTCGTTGGAGCTATAGCTGCTGGGAATGCTGTG
EST: gi|254317849|gb|GR826833.1|GR826833
EST:     TGAACCACTGGGTGTTGTGTTGGTCATCTCTGCATGGAACTATCCAATTT                         TGTTGTCTCTTGATCCAGTCGTTGGAGCTATAGCTGCTGGGAATGCTGTGG
genomic: TGAACCACTGGGTGTTGTGTTGGTCATCTCTGCATGGAACTATCCAATTTgtatgttaat ... gtattgccagTGTTGTCTCTTGATCCAGTCGTTGGAGCTATAGCTGCTGGGAATGCTGTGG
EST: gi|213591368|gb|DB955716.1|DB955716
EST:     TGAACCACTGGGTGTTGTGTTGGTCATCTCTGCATGGAACTATCCAATTT                         TGTTGTCTCTTGATCCAGTCGTTGGAGCTATAGCTGCT
genomic: TGAACCACTGGGTGTTGTGTTGGTCATCTCTGCATGGAACTATCCAATTTgtatgttaat ... gtattgccagTGTTGTCTCTTGATCCAGTCGTTGGAGCTATAGCTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCAAAACATCAATCAGAACTTTTCCTTCGTCAGCTGAAATAGTACCTGAACCACTGGGTGTTGTGTTGGTCATCTCTGCATGGAACTATCCAATTTgtatgttaataaatatttacttaaacttgagtttttttatatatactttgagttgacattttcagccatttctgataagttattctctgtctgtattgccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA