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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACTTGCAAAAGATTTTGCAGTGGCTGGCACTGCATCCGAGTCTCTTTATGGTGCTTGTGAGTCAATGTTTAAGCCTGACATGgtttgtctcgaaattcaatttgttgcctttaatgtcactttttttagaatttgcaaattcctgcatttagtctatattttgtttgtgttgcttgagtttt...

Basic information

species Glycine max
transcript GLYMA06G11930.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G11930.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g08520.1 (Oryza sativa), 5'ss of exon 5
GGAACTTGCAAAAGATTTTGCAGTGGCTGGCACTGCATCCGAGTCTCTTTATGGTGCTTGTGAGTCAATGTTTAAGCCTGACATGgtttgtctcgaaattcaatttgttgcctttaatgtcactttttttagaatttgcaaattcctgcatttagtctatattttgtttgtgttgcttgagtttt----------
|||||| || ||||||||||  ||  |||||||||| || || || || ||||||||||||||||| |||| ||||||   ||||||| || |  | ||  ||  | |   |   ||||  | |||  ||| | ||||    | | ||      ||  | ||    ||| | |  |   | |||           
GGAACTAGCGAAAGATTTTGTGGTTTCTGGCACTGCTTCAGAATCACTATATGGTGCTTGTGAGTCCATGTATAAGCCAAGCATGgttagttt--acatgaaaactatctgcag-aatggtattttacttatagtttg-gtctccttgagcactgtaaacatgacatttttctgtcacaattttctttggtgaag

upper sequence: GLYMA06G11930.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os06g43570.1 (Oryza sativa), 5'ss of exon 6
GGAACTTGCAAAAGATTTTGCAGTGGCTGGCACTGCATCCGAGTCTCTTTATGGTGCTTGTGAGTCAATGTTTAAGCCTGACATGgtttg--tctcgaaattcaatttgttgcctttaa----tgtcactttttttagaatttgcaaattcctgcatttagtctatattttgtttgtgttgcttgagtttt
|||||| || || ||||| |  ||  | || || ||||| |||||||| ||||||||||||||||| ||||  || ||  ||||||| ||  | |     ||    |  |  | ||||     ||| || || ||||     |  ||  || ||   |    | || |    ||| ||||   ||  | | 
GGAACTAGCTAAGGATTTCGTTGTATCGGGGACAGCATCGGAGTCTCTATATGGTGCTTGTGAGTCCATGTACAAACCAAACATGgtatgcatttgtttgtttgtatgatcacatttagcccgtgtaacattctttatgggat--aacatcatgggctatagcaatttcgcatttctgtt---tggatct-

upper sequence: GLYMA06G11930.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G117544_T01 (Zea mays), 5'ss of exon 5
GGAACTTGCAAAAGATTTTGCAGTGGCTGGCACTGCATCCGAGTCTCTTTATGGTGCTTGTGAGTCAATGTTTAAGCCTGACATGgtttgtctc--------gaaattcaatttgttg--cctttaa-tgtcactttttttagaatttgcaaattcctgcatttagtctatattttgtt-tgtgttgcttgagtttt
|||||| |||||||||||||  ||  | || ||||| || ||||| |||||||||||||||||||| |||| ||||||  |||||||| || ||          || || ||        ||||||| || || || |||     ||      ||  || |  || |   |||| | || |||||            
GGAACTAGCAAAAGATTTTGTGGTCTCCGGTACTGCTTCAGAGTCACTTTATGGTGCTTGTGAGTCCATGTATAAGCCAAACATGgttagtttctttacacgagaactcgatacagaaaacctttaactgccaattctttctagtttgagttgtttttgaaagtatttggtattctattatgtgt------------

upper sequence: GLYMA06G11930.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0001g02260.t01 (Vitis vinifera), 5'ss of exon 5
GGAACTTGCAAAAGATTTTGCAGTGGCTGGCACTGCATCCGAGTCTCTTTATGGTGCTTGTGAGTCAATGTTTAAGCCTGACATGgtttgtctcgaaattcaatttg--ttgccttt--aatgtcactttttttagaatttgcaaattcctgcatttagtctatattttgtttgtgttgcttgagtttt-
||| ||||| ||||||||||  || ||||| ||||| || ||||||||||||||||| || ||| | ||||| ||||| ||||||||||||||| | ||| || |||  ||   |||  | ||  |   | |||    |||  || ||     |  |    |||  || |  |||||    | |  | | 
GGAGCTTGCTAAAGATTTTGTTGTTGCTGGTACTGCCTCTGAGTCTCTTTATGGTGCCTGCGAGGCCATGTTCAAGCCCGACATGgtttgtctcaatattaaacttgaattaattttctattgaaatcctattttatttttttaagtt-----aagttccatatgcttggaatgtgtgaactcacatatg