Sequence
atgc intronic sequence ATGC exonic sequenceGGTTGAGGTTTTGGACCTGCTCGGAGCCAGGGAGATTGCGGTGCGTGCTTGGGACGAGGCCCTCAACACCCAACCTGAAAAGCTCATTTGGAATGTTATGgtacgttcctgtctctgccacattcttttaattgaaattttaactttaattaggcctctgaaatttgataggattgttaactacaattacaatgcacgta...
Basic information
species | Glycine max |
transcript | GLYMA06G11430.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G11430.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g53130.1 (Oryza sativa), 5'ss of exon 3
GGTTGAGGTTTTGGACCTGCTCGGAGCCAGGGAGATTGCGGTGCGTGCTTGGGACGAGGCCCTCAACACCCAACCTGAAAAGCTCATTTGGAATGTTATGgtacgttcctgtctct-gccacattcttttaattgaaattttaactttaattaggcctctgaaatttgataggattgt-taactacaattacaatgcacgta
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TGTCGAGGTGCTCGAGCTGCTCGCCGCCAAGGAGATCGCCGTCCGCGCCTGGGACGAGTCCCTCAACACCCAGCCGGAGAAGCTCATTTGGAATCTCATGgtaagcactaagcaccagcaacggcaacgccatccg--tttcaacgacgacgatgtgcttacgttttggttcgtgtgcgtgtgtgcag--------------
upper sequence: GLYMA06G11430.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G568636_T01 (Zea mays), 5'ss of exon 3
GGTTGAGGTTTTGGACCTGCTCGGAGCCAGGGAGATTGCGGTGCGTGCTTGGGACGAGGCCCTCAACACCCAACCTGAAAAGCTCATTTGGAATGTTATGgtacgttcctgtctctgccacattcttttaattgaaattttaactttaattaggcctctgaaatttgataggattgttaactacaattacaatgcacgta
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GGTGGAGGTCCTCGACCTGCTCGGCGCCAAGGAGATCGCCGTGCGCGCATGGGACCAGTCGCTCAACACCCAGCCCGAGAAGCTCATATGGAACCTCATGgtacatatatata-ctagcacataatattaatactgaataagtttctgtttctgctcctgatgatatataaatctgatgatggcacag------------
upper sequence: GLYMA06G11430.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0001g03910.t01 (Vitis vinifera), 5'ss of exon 3
GGTTGAGGTTTTGGACCTGCTCGGAGCCAGGGAGATTGCGGTGCGTGCTTGGGACGAGGCCCTCAACACCCAACCTGAAAAGCTCATTTGGAATGTTATGgtacgttcctgtctctgccacattcttttaattgaaattttaactttaattaggcctctgaaatttg-atagg--attgttaactacaattacaatgcacgta--
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GGTGGAGGTGCTGGATCTCATTGGTGCCAAAGAGATTGCAGTTCGAGCCTGGGATGAGACCCTCAACACCCAGCCCGAGAAGCTCATCTGGAACGTCATGgtatgttc-tatccctgtc---tcccttcaatc-acattttgacgcgtgtcctcttccttatgtctgtagaggtaattgtttggtcccaacctcccgtgggttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|20813101|gb|BQ297579.1|BQ297579EST: GGGACGAGGCCCTCAACACCCAACCTGAAAAGCTCATTTGGAATGTTATG GGCATGATGAACAACTGCTGGTTCAGAGTGAAAACCAATGTGTGCAGGCCC
genomic: GGGACGAGGCCCTCAACACCCAACCTGAAAAGCTCATTTGGAATGTTATGgtacgttcct ... acatgtacagGGCATGATGAACAACTGCTGGTTCAGAGTGAAAACCAATGTGTGCAGGCCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTTGAGGTTTTGGACCTGCTCGGAGCCAGGGAGATTGCGGTGCGTGCTTGGGACGAGGCCCTCAACACCCAACCTGAAAAGCTCATTTGGAATGTTATGgtacgttcctgtctctgccacattcttttaattgaaattttaactttaattaggcctctgaaatttgataggattgttaactacaattacaatgcacgta
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