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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGgtgattttttacccactatcttgtggaaattttataagtccttgtatgtagtagtgaaagtaaaaaaacctaatgaataagctaatgttacttaatatga...

Basic information

species Glycine max
transcript GLYMA06G09240.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G09240.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g54020.2 (Oryza sativa), 5'ss of exon 7
GGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGgtgattttt-----tacccactatcttgtggaaattttataagtccttgtatgtagtagtgaaagtaaaaaaacctaatg-aataagctaatgttact-taatatga-------------------------------------------
|| |||||| | ||||| || || |||||||||||||||||| | ||||||||||| || || || || ||||| | | ||     |  | | ||| ||   |   || |||      |  | ||||| ||  ||  | || | |  || |  || ||   ||  ||  | |  |                                               
GGTGATGAAAATGTTGGAGTGGCACTTTTGACTTATCCTGTTTTAATGGCTTCTGACATTCTCCTGTACCAGgtaaatattactcgtggctattatttttctggg-ttgtattctcagtgatgtgtagaagctaatattaatagatgtagtttaacaattcaactttgttatggttctgtttctctcctttctatgatgccaataatagctaatgattgcag

upper sequence: GLYMA06G09240.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G177970_T03 (Zea mays), 5'ss of exon 7
GGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGgtgattttttacccact-atcttgtggaaattttataagtccttgtatgtagtagtgaaagtaaaaaaacctaatgaataagctaatgttacttaatatga
|| |||||| | ||||||||||| |||||||||||||||||||| ||||||||||| || ||| | || ||||||| || ||| |  || || | |    |||      |    ||  ||  ||  ||     |         |     ||      |||     |    |  
GGTGATGAAAATGTTGGGGTTGCACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAGgtgaattattaacagctcatttagctagaataaatgcaacatttcaattcagctgtatttattcccttgtttttctcatctcaatatgaacaatggctta-

upper sequence: GLYMA06G09240.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G177970_T01 (Zea mays), 5'ss of exon 7
GGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGgtgattttttacccac-----tatcttgtggaaattttata----agtcc--ttgtatgtagtagtgaaagtaaaaaaacctaatgaataagctaatgttacttaatatga------
|| |||||| | ||||||||||| |||||||||||||||||||| ||||||||||| || ||| | || ||||||| || ||| |  |     || || |   ||||   | |    | | |   ||||| || |        |     | |  |||    |   |    |||||| | ||||      
GGTGATGAAAATGTTGGGGTTGCACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAGgtgaattattaacagctcatttagctagaataaatgcaacatttcaattcagctgtatttattcccttgtttttctcatctcaatatgaacaatggc-ttacttga-atgatcacag

upper sequence: GLYMA06G09240.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0008g00200.t01 (Vitis vinifera), 5'ss of exon 7
GGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGgtgattttttacccactatcttgtggaaattttataagtccttgtatgtagtagtgaaagtaaaaaaacctaatgaataagctaatgttacttaatatga----
||||||||| | ||||||||||||||| |||||||||||||||| |||||||||||||| ||| ||||||||||     |  |     ||| | ||  ||  ||  | |    || | | |  | |      | |          |  | | ||  ||   ||| ||  | |    
GGAGATGAAAATGTTGGGGTTGCCCTTCTGACTTATCCTGTTCTCATGGCTTCTGATATTCTTTTATATCAGgtatacatacagtt-ttatgtagtacaa-cttgctgaacatttat-tcttttgggattcattatttggttctgtagacatgcctatac-actcaagctcatata

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23052815|gb|BU577306.1|BU577306
EST:     CCCTTTTGACTTATCCTGNTCTGATGGCTTCTGATATACTTCTATATCAG                         TCTGATTTTGTCCCTGTTGGTGAAGATCAA
genomic: CCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGgtgatttttt ... gcttctgcagTCTGATTTTGTCCCTGTTGGTGAAGATCAA
EST: gi|23052769|gb|BU577260.1|BU577260
EST:     CCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAG                         TCTGATTTTGTCCCTGNTGGTGAAGATCAAAAGCAGCACTTGGAGTTGACT
genomic: CCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGgtgatttttt ... gcttctgcagTCTGATTTTGTCCCTGTTGGTGAAGATCAAAAGCAGCACTTGGAGTTGACT