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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAGTGAACAATGTTGATGTTGTTTACACTCCCTGGTCTAATTTAAAGAAAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATGgtgaattttcttacacttagatattttgcgtattctttcactttttttttccagttcttcgtcttttgccttttttttcacagtgggtgggtagatgaatggttgagcttccgttttcagagtatcattttctggttttcgtgtattttag

Basic information

species Glycine max
transcript GLYMA06G08640.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G08640.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g13440.1 (Oryza sativa), 5'ss of exon 4
TAAAGTGAACAATGTTGATGTTGTTTACACTCCCTGGTCTAATTTAAAGAAAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATGgtga--attttcttacacttagatattttgcgtattctttcactttttttttccagttcttcgtcttttgccttttttttcacagtgggtgggtag-atgaatggttgagcttccgttttcagagtatcattttctggttttcgtgtattttag
|||    || ||  ||||||| ||||| || || |||| |||| ||||||| ||| | || |||||||| || |||||||||||||||||||| ||| ||||||  |  || || | ||||  |  | ||       | | | ||  | |  |  |   ||  |     || | |   || |   | |    ||   |||                                                      
TAAGACTAATAACATTGATGTGGTTTATACACCATGGTATAATCTAAAGAAGACTCCATCCATGGATGTGGGTCAAGTTGGTTTTCACAACTCTAAATTGgtgagaagcttatttcccttacttcctgtgttaggcatgtaatttagtataacttgcatttatttgaacgcttatacatttaggtttgtctagtgttatg------------------------------------------------------

upper sequence: GLYMA06G08640.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G157332_T05 (Zea mays), 5'ss of exon 3
TAAAGTGAACAATGTTGATGTTGTTTACACTCCCTGGTCTAATTTAAAGAAAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATGgtgaattttcttacacttagatattttgcgtattctttcactttttttttccagttcttcgtcttttgccttttttttcacagtgggtgggtagatgaatggttgagcttccgttttcagagtatcattttctggttttcgtgtattttag
|||||| || ||  ||||||| ||||| ||||| ||||  ||||| ||||| ||  ||||||||||||| || |||||||||||||||||| | ||| ||||||    || |  ||||     | ||    ||  || ||      || |   || | |   ||||||  | | | || |||  |  |  || | |  |||| |                                               
TAAAGTCAATAACATTGATGTAGTTTATACTCCATGGTACAATTTGAAGAAGACCCCTTCAATGGATGTAGGCCAAGTTGGTTTTCACAACCCTAAATTGgtgagagctcattaactttttcttattcacaatgtttacagcaggattat---gtacatatgcttttgtatgtatcttgacaaagtttatgt-gctttatggat-----------------------------------------------

upper sequence: GLYMA06G08640.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G11500.2 (Arabidopsis thaliana), 5'ss of exon 3
TAAAGTGAACAATGTTGATGTTGTTTACACTCCCTGGTCTAATTTAAAGAAAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATGgtgaattttcttacacttagatattttgcgtattctttcactttttttttccagttcttcgtcttttgccttttttttcacagtgggtgggtagatgaatggttgagcttccgttttcagagtatcattttctggttttcgtgtattttag
 || |||||||| ||||||||||| |||||||| ||||| || || ||||||||||| || ||||||||||| ||||||||||| ||||| ||||| ||||| |  ||  | |    || | |  ||  |  | |    || |    |   ||     | ||  |    |||   |   |   | | |   || |   ||  |||   || ||||  |||                               
CAAGGTGAACAACGTTGATGTTGTGTACACTCCGTGGTCCAACTTGAAGAAAACTGCCTCCATGGATGTTGGTCAAGTTGGTTTCCACAATTCAAAGATGgtaagcttcttcatctctaaagaaattttggttgcgcatacataaactgctcaaagtatggttgtaaagcttcgatgata---ttgataccta-actcatatttg---tttcgtt--cag-------------------------------

upper sequence: GLYMA06G08640.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0008g03810.t01 (Vitis vinifera), 5'ss of exon 3
TAAAGTGAACAATGTTGATGTTGTTTACACTCCCTGGTCTAATTTAAAGAAAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATGgtgaattttcttacacttagatattttgcgtattctttcactttttttttccagttcttcgtcttttgccttttttttcacagtgggtgggtagatgaatggttgagcttccgttttcagagtatcattttctggttttcgtgtattttag
 || |||||||||||||| || || |||||||| |||   ||| | |||||||||||||| ||||||||||| |||||||||||| |||| |||||||||||||  ||  |||   |    |  | || |     || ||  |||| ||||   || || ||     || |   | |        |   | ||||| | || |  || ||  ||  | |   ||                           
CAAGGTGAACAATGTTGACGTCGTATACACTCCATGGCACAATCTGAAGAAAACTGCTTCTATGGATGTTGGCCAAGTTGGTTTTTACAATTCAAAAATGgtgagcttctttattttcttctgctctgtgc---tttgcaacttttatttc---tttttggtga---gcatgcatat--------gaaagatagat-actgatgtagtttttgtgcttaatttag--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120534483|gb|EH262616.1|EH262616
EST:     AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATG                         GTTCGAACTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
genomic: AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATGgtgaattttc ... tgtattttagGTTCGAACTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
EST: gi|298183696|gb|HO028909.1|HO028909
EST:     AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATG                         GTTCGAACTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
genomic: AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATGgtgaattttc ... tgtattttagGTTCGAACTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
EST: gi|298164673|gb|HO014318.1|HO014318
EST:     AGACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATG                         GTTCGAACTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
genomic: AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATGgtgaattttc ... tgtattttagGTTCGAACTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
EST: gi|298173543|gb|HO016879.1|HO016879
EST:     AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATG                         GTTCGAATTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
genomic: AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATGgtgaattttc ... tgtattttagGTTCGAACTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
EST: gi|151411303|gb|EV281114.1|EV281114
EST:     AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATG                         GTTCGAACTGTGAGAGCTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
genomic: AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATGgtgaattttc ... tgtattttagGTTCGAACTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
EST: gi|193591319|gb|FK547764.1|FK547764
EST:     AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATG                         GTTCGAACTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
genomic: AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATGgtgaattttc ... tgtattttagGTTCGAACTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
EST: gi|192328317|gb|FK020028.1|FK020028
EST:     ACTGCTTCAATGGATGTTGGGCAAGTTTGGTTTTTCACAACTCAAAAATG                         GTTCGAACTGTGAGAGTTTGAGAAGCGGATAAATGAGATTTGTTAACAGGC
genomic: ACTGCTTCAATGGATGTTGGGCAAG-TTGG-TTTTCACAACTCAAAAATGgtgaattttc ... tgtattttagGTTCGAACTGTGAGAG-TTGAGAAGCGGATAAATGAGA-TTGTTAACAGGC
EST: gi|151412239|gb|EV282051.1|EV282051
EST:     AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATG                         GTTCGAACTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
genomic: AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATGgtgaattttc ... tgtattttagGTTCGAACTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
EST: gi|6455553|gb|AW186236.1|AW186236
EST:     AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAACAATG                         GTTCGAACTGTGAGAGTTGAGAAGCGGATAGATGAGATTGTTGACATGCTG
genomic: AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATGgtgaattttc ... tgtattttagGTTCGAACTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
EST: gi|58016161|gb|CX702903.1|CX702903
EST:     AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATG                         GTTCGAACTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
genomic: AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATGgtgaattttc ... tgtattttagGTTCGAACTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
EST: gi|151394766|gb|EV264637.1|EV264637
EST:     AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATG                         GTTCGAACTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
genomic: AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATGgtgaattttc ... tgtattttagGTTCGAACTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
EST: gi|58015274|gb|CX702016.1|CX702016
EST:     AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATG                         GTTCGAACTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
genomic: AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATGgtgaattttc ... tgtattttagGTTCGAACTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
EST: gi|18734019|gb|BM527940.1|BM527940
EST:     AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATG                         GTTCGAACTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
genomic: AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATGgtgaattttc ... tgtattttagGTTCGAACTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
EST: gi|208307232|gb|GE101968.1|GE101968
EST:     AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATG                         GTTCGAACTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
genomic: AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATGgtgaattttc ... tgtattttagGTTCGAACTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
EST: gi|120534643|gb|EH262776.1|EH262776
EST:     AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATG                         GTTCGAACTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
genomic: AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATGgtgaattttc ... tgtattttagGTTCGAACTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
EST: gi|298168083|gb|HO013346.1|HO013346
EST:     AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATG                         GTTCGAACTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA
genomic: AAACTGCTTCAATGGATGTTGGGCAAGTTGGTTTTCACAACTCAAAAATGgtgaattttc ... tgtattttagGTTCGAACTGTGAGAGTTGAGAAGCGGATAAATGAGATTGTTAACAGGCTA