Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGTTGTGAAAGTAGATCCGAATTTGAATGTTATTTTGACTGCTTGCCTCACTGTGTTTGTGGGATGTTACCGCTCCGTTAAACCAACCCCACCAACTgtaagtagtgattctctgcttatcctattctttgtattgtgtttttcgtggtccaagatatgatttccgtgaatcgtgttgttgatgtgttgctaatggttttgcag

Basic information

species Glycine max
transcript GLYMA06G08620.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6072670|gb|AW102057.1|AW102057
EST:     TCACTGTGTTTGTGGGATGTTACCGCTCCGTTAAACCAACCCCACCAACT                         GAGACAATGTCCAATGAACATGCCATGCGTTTTCCCTTTGTTGGGAGTGCA
genomic: TCACTGTGTTTGTGGGATGTTACCGCTCCGTTAAACCAACCCCACCAACTgtaagtagtg ... ggttttgcagGAGACAATGTCCAATGAACATGCCATGCGTTTTCCCTTTGTTGGGAGTGCA
EST: gi|213600256|gb|DB964336.1|DB964336
EST:     TCACTGTGTTTGTGGGATGTTACCGCTCCGTTAAACCAACCCCACCAACT                         GAGACAATGTCCAATGAACATGCCATGCGTTTTCCCTTTGTTGGGAGTGCA
genomic: TCACTGTGTTTGTGGGATGTTACCGCTCCGTTAAACCAACCCCACCAACTgtaagtagtg ... ggttttgcagGAGACAATGTCCAATGAACATGCCATGCGTTTTCCCTTTGTTGGGAGTGCA
EST: gi|193629979|gb|FK573285.1|FK573285
EST:     TCACTGTGTTTGTGGGCTGTTACCGCTCCGTTAAACCAACCCCACCAACT                         GAGACAATGTCCAATGAACATGCCATGCGTTTTCCCTTTGTTGGGAGTGCA
genomic: TCACTGTGTTTGTGGGATGTTACCGCTCCGTTAAACCAACCCCACCAACTgtaagtagtg ... ggttttgcagGAGACAATGTCCAATGAACATGCCATGCGTTTTCCCTTTGTTGGGAGTGCA