Sequence
atgc intronic sequence ATGC exonic sequenceGATATATTGTTGACATGCAGTCGATGGATTCAACAGTTTCAGAAGTGAACCATATTCGAGATGCCCAGTTGTATCCGAAACTTGTTGCTCTTGTTATTGAgtaagtattgccgataagaaatttgacagatgtaatgttattgttattgcctcagttgattttattctgtggcatttgatattttagaggtggtttgttt...
Basic information
species | Glycine max |
transcript | GLYMA06G08520.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G08520.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G178319_T01 (Zea mays), 5'ss of exon 3
GATATATTGTTGACATGCAGTCGATGGATTCAACAGTTTCAGAAGTGAACCATATTCGAGATGCCCAGTTGTATCCGAAACTTGTTGCTCTTGTTATTGAgtaagtattgccgataagaaatttga--cagatgtaatgttattgt--tattgcctcagttgattttattctgtggcatttgatattttagaggtggtttgttt
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GGTACATTGTAGACATGCAATCCATGGATTCAACAGTTTCAGAAATAAATCGGCTTCGGGATAGACAGTTATTCCCAAAGTTAATGGACCTTGTTGATGGgtgagtatt-cttttgcaacaattgattctcttatattttaattgtagcataccttgtgtacatttcattcaattgtaatggattgtttgtctgttacctt---
upper sequence: GLYMA06G08520.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G25590.1 (Arabidopsis thaliana), 5'ss of exon 3
GATATATTGTTGACATGCAGTCGATGGATTCAACAGTTTCAGAAGTGAACCATATTCGAGATGCCCAGTTGTATCCGAAACTTGTTGCTCTTGTTATTGAgtaagtattgccgataagaaatttgacagatgtaatgttattgttattgcctcagttgattttattctgtggcatttgatattttagaggtggtttgttt
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GATATATTGTTGACATGCAATCCATGGATTCAACGGTTTCTGAAGTAAACCGTTTAAGGGATGATCAATTGTATCCAAGACTTGTTGCCTTAGTTGAAGGgtaagttcttctccttctaatgattctctgcaaagcctttctctctttaac-caatttttttggctcgtggatatgcag---------------------
upper sequence: GLYMA06G08520.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0008g04200.t01 (Vitis vinifera), 5'ss of exon 3
GATATATTGTTGACATGCAGTCGATGGATTCAACAGTTTCAGAAGTGAACCATATTCGAGATGCCCAGTTGTATCCGAAACTTGTTGCTCTTGTTATTGAgtaagtattgccgataagaaatttgacagatgtaatgttattgttattgcctcagttgattttattctgtggcatttgatat--------tttagaggtggtttgttt
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GATATATAGTTGACATGCAGTCCATGGATTCGACTGTTTCTGAAGTAAATCACATCCGTGATGATCAATTGTACCCAAAACTTGTTGCTCTTGTGGACGGgtaagt-ttccattcaggaaatttga-agattccttctctacattctagtatttcacaatattttttcgatgaacacaacatagcttctttttaaaagtatc------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193656666|gb|FK602466.1|FK602466EST: CATATTCGAGATGCCCAGTTGTATCCGAAACTTGTTGCTCTTGTTATTGA GATGGCAAATATGTGGGAAAATATGTGCTTACATCATGACAGCCAGCTG
genomic: CATATTCGAGATGCCCAGTTGTATCCGAAACTTGTTGCTCTTGTTATTGAgtaagtattg ... ttctcttcagGATGGCAAATATGTGGGAAAATATGTGCTTACATCATGACAGCCAGCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATATATTGTTGACATGCAGTCGATGGATTCAACAGTTTCAGAAGTGAACCATATTCGAGATGCCCAGTTGTATCCGAAACTTGTTGCTCTTGTTATTGAgtaagtattgccgataagaaatttgacagatgtaatgttattgttattgcctcagttgattttattctgtggcatttgatattttagaggtggtttgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaggtgg