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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGAAAAACCTGTTTAGTAATTTAATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAAgtatgttgtctcctacctgtcagttccaggtccttatatctgatgttctccaatttgctaaatccaaagaataacttttttcctgccaaatttttctttccacag

Basic information

species Glycine max
transcript GLYMA06G06310.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G06310.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 4
GTCATGGTGGTGCTCGTGCTGCTGAGTATGTCAAGAAAAACCTGTTTAGTAATTTAATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAAgtatgttgtctcctacctgtcagttccaggtccttatatctgatgttctccaatttgctaaatccaaagaataacttttttcctgccaaatttttctttccacag----
||||||| |||||||| || ||||| ||||| ||  ||||||| ||||||||||| ||||| || ||||| ||||||||||| || |||||||| ||| ||   |||| ||||  ||||       | |||  | | | |     | |   |  || | | || ||| | ||   | ||       ||||| | || |  |||     
GTCATGGAGGTGCTCGAGCAGCTGAATATGTTAAACAAAACCTTTTTAGTAATTTGATCAGGCATCCAAAGTTCATTTCTGATACAAAATCAGCTATAGgt---ttgtttcctgactgtgccagtaatgtcactttctatagc-ctgtatgaagtgttcactctaaatactactgtctt-------aaattatcctctgtacatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192305900|gb|FG995786.1|FG995786
EST:     TAATTTAATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAA                         CTGATGCATATAATCATACCGATTCTGAGTTGCTGAAATCAGAAAATAGTC
genomic: TAATTTAATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAAgtatgttgtc ... ctttccacagCTGATGCATATAATCATACCGATTCTGAGTTGCTGAAATCAGAAAATAGCC