Sequence
atgc intronic sequence ATGC exonic sequenceCAGTGAATTCAAATGGCAAGCTCATGGCTTTTTCCTTACCTACAAGTACTTCAATTACACCTCTGGCTACATACATCACTGCACTGTTCACAATTTGGAGgtgtgtgccgcacttgttcttgcctagctctcactattttttttcactttatagcaattgggtaacacctacctcttctcattgcaattatatacag
Basic information
species | Glycine max |
transcript | GLYMA06G03100.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G03100.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0001g13330.t01 (Vitis vinifera), 5'ss of exon 2
CAGTGAATTCAAATGGCAAGCTCATGGCTTTTTCCTTACCTACAAGTACTTCAATTACACCTCTGGCTACATACATCACTGCACTGTTCACAATTTGGAGgtgtgtgccgcacttgttcttgcctagctctcactattttttttcactttatagcaattgggtaacacctacct--------cttctcattgcaattatatacag-----
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TGGCAAACACAAGAGTCATGCCAATGGCATTGTTCTTACCTACAAGTACTTCAAGTACACTTCTGGATATATACATCACTGTACCATCAGGAATTTGGTAgtacgtgcatctttttatctcaca-acctttaataaattttcatggtttgtcggttctcacttaaaatttaaccgtatggaacttaacaactgaattactatcaatgcag
upper sequence: GLYMA06G03100.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0001g13340.t01 (Vitis vinifera), 5'ss of exon 2
CAGTGAATTCAAATGGCAAGCTCATGGCTTTTTCCTTACCTACAAGTACTTCAATTACACCTCTGGCTACATACATCACTGCACTGTTCACAATTTGGAGgtgtgtgccgcacttgttcttgcctagctctcactattttttttcact-ttatagcaattgggtaacacctacctcttctcattgcaattatatacag----------
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TAGCAAGACCAAGAGTCATGCCAAGGGCATTGTTCTTACCTACAAGTACTTCAATTACACTTCTGGATACATACATCACTGCACCATCAAGAACTTGACGgtgtgtgcaga--ttgtcatcttacagc-cttaatatattttcacatgatcaatttaatttcatagt--ttgcagtttttagttaaaaaaaaaaaaattaatttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9204908|gb|BE331132.1|BE331132EST: GAATGTACACCTCTGGCTACATACATCACTGCACTGTTCACAATTTGGAG TTTGATACCAAATATTACTATGAGGTTGGAATAGGGAATACCACTCGACAA
genomic: CAAT-TACACCTCTGGCTACATACATCACTGCACTGTTCACAATTTGGAGgtgtgtgccg ... ttatatacagTTTGATACCAAATATTACTATGAGGTTGGAATAGGGAATACCACTCGACAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGTGAATTCAAATGGCAAGCTCATGGCTTTTTCCTTACCTACAAGTACTTCAATTACACCTCTGGCTACATACATCACTGCACTGTTCACAATTTGGAGgtgtgtgccgcacttgttcttgcctagctctcactattttttttcactttatagcaattgggtaacacctacctcttctcattgcaattatatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG