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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCAAGATTTAGTGCCCGGTTGCAACAAAGTCACGGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGgtaagagttaggttcattatttcctctttgcctttcacattgatctattcaaaattcatgtaaacctaacttcgtatgcag

Basic information

species Glycine max
transcript GLYMA06G01430.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01430.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S68_190V6.1 (Physcomitrella patens), 5'ss of exon 3
TTTGCAAGATTTAGTGCCCGGTTGCAACAAAGTCACGGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGgtaagagttaggttcattatttcctctttgcctttcacattgatctattcaaaattcatgtaaacctaacttcgtatgcag---------------------------------------------------------
  |||| ||  | || ||||| |||  ||||||||| || || || |  |||||||| || |||||||||||||||||||| || |||||||||||||| ||| |  |      |||| |   | |  |||   | |   |  || |||||    | | | |  | |    |  |    ||                                                         
CCTGCAGGACCTCGTACCCGGCTGCCGCAAAGTCACCGGCAAGGCAGTCATGCTTGACGAGATCATCAACTATGTTCAATCCCTCCAACGACAAGTTGAAgtatgtctcttacccattttcaacgcactgc---taatgctattccattcatgtcttaggcacccttcttgttatcgctagtgatgaattgtagtctagtattgagttgtatcgtacactttgttatcttttttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7795283|gb|AW780680.1|AW780680
EST:     TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAG                         TTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTGAGTATT
genomic: TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGgtaagagtta ... tcgtatgcagTTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTGAGTATT
EST: gi|10709190|gb|BF008914.1|BF008914
EST:     TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAG                         TTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTGAGTATT
genomic: TGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAACGACAAGTTGAGgtaagagtta ... tcgtatgcagTTTCTCTCAATGAAATTAGCTGCTGTGAACCCAAGGCTTGACTTGAGTATT