Sequence
atgc intronic sequence ATGC exonic sequenceATTCTTGAGAGCAAGGAAGTTTGACATTGAGAAAACAAAACAAATGTGGACAGATATGCTCAAGTGGAGGCAGGAATTTGGTGCTGACACTATCATGGAGgtatttccgtgcaaaaataggaaaatcactcttcatggtgtgatcttttttgtgtataacttttttatctatatatctaactataaattttttatcctcaag
Basic information
species | Glycine max |
transcript | GLYMA06G01270.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G01270.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G36490.1 (Arabidopsis thaliana), 5'ss of exon 2
ATTCTTGAGAGCAAGGAAGTTTGACATTGAGAAAACAAAACAAATGTGGACAGATATGCTCAAGTGGAGGCAGGAATTTGGTGCTGACACTATCATGGAGgtatttccgtgcaaaaataggaaaatcactcttcatggtgtgatcttttttgtgtataacttttttatctatatatctaactataaattttttatcctcaag
||| |||| || || || ||||| |||||||||| ||||| |||||||| || ||||| | |||||| | |||||||||||||| ||| |||||||||||| | | ||||| | | || || | | | || || | || | | | | || | ||| | |||
ATTTTTGAAGGCTAGAAAATTTGATCTTGAGAAAACCAAACAGATGTGGACTGAAATGCTTAGATGGAGGAAAGAATTTGGTGCTGATACTGTCATGGAGgtatgattattattctagaggaacgtt-ttgcagatttgaaaatggtctctttgagtagtactaacattctcttctttggtt-----ttgtatatttttaag
upper sequence: GLYMA06G01270.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G18180.1 (Arabidopsis thaliana), 5'ss of exon 3
ATTCTTGAGAGCAAGGAAGTTTGACATTGAGAAAACAAAACAAATGTGGACAGATATGCTCAAGTGGAGGCAGGAATTTGGTGCTGACACTATCATGGAGgtatttccgtgcaaaaataggaaaatcactcttcatggtgtgatcttttttgtgtataacttttttatctatatatctaactataaattttttatcctcaag
|| |||| || || || ||||| ||||||||||||| ||||||||| | || |||||| |||||| |||| |||||||||||||| | |||||||| | | | | | | | | |||| || | ||| | || || ||| | | | | || | || | |||
GTTTTTGAAGGCTAGAAAATTTGATCTTGAGAAAACAAATCAAATGTGGTCTGACATGCTCCGATGGAGGAAGGAGTTTGGTGCTGACACAGTTATGGAGgtgtgaattcatagagtttctttatgaatgcaagaaggtgc-attgtggttgaaaacaatgttcttactcttttttttttctttgtatctcttag-------
upper sequence: GLYMA06G01270.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0038g04480.t01 (Vitis vinifera), 5'ss of exon 3
ATTCTTGAGAGCAAGGAAGTTTGACATTGAGAAAACAAAACAAATGTGGACAGATATGCTCAAGTGGAGGCAGGAATTTGGTGCTGACACTATCATGGAGgtatttccgtgcaaaaataggaaaatcactcttcatggtgtgatcttttttgtgtataacttttttatctatatatctaactat--aaatttttta--tcctcaag---------------------
|||||||| || ||||| ||||| ||||| |||||||| ||||||||| | |||||| |||| |||||| |||| ||||| |||||||| ||||||||||||| | || |||| | ||| | || | | |||| || | | | | | || | | || ||| || | ||||| | | || ||
ATTCTTGAAGGCCAGGAAATTTGATATTGAAAAAACAAAGCAAATGTGGGCTGATATGATCAATTGGAGGAAGGAGTTTGGCGCTGACACAATCATGGAGgtatcatcttgggaaaa--agtcaattatagttggt--ttagatcacttgtatagaaaccacaattgggtgga-gtccaaccatttacattttctgagttcttaaccttataattctctgttcctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151394801|gb|EV264672.1|EV264672EST: AGATATGCTCAAGTGGAGGCAGGAATTTGGTGCTGACACTATCATGGGAG GATTTTGAATTCAATGAACTAGAGGAAGTTCTAAAATACTACCCACAAGG
genomic: AGATATGCTCAAGTGGAGGCAGGAATTTGGTGCTGACACTATCATGG-AGgtatttccgt ... tatcctcaagGATTTTGAATTCAATGAACTAGAGGAAGTTCTAAAATACTACCCACAAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTCTTGAGAGCAAGGAAGTTTGACATTGAGAAAACAAAACAAATGTGGACAGATATGCTCAAGTGGAGGCAGGAATTTGGTGCTGACACTATCATGGAGgtatttccgtgcaaaaataggaaaatcactcttcatggtgtgatcttttttgtgtataacttttttatctatatatctaactataaattttttatcctcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA