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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCAAAAGACTTGACCACTTCTTTTGTGAAAGTTGCTCTGCTGAAGGTCAAAAAAAGTTGCAAAACTCTCATTCTGCTTCTAGACACTCAGATACAAAGgtatttcaaataatgttgtttgataacatgagtttgttttcacttttcagaatttaataccatttgaattgactcgctgaggctttggagaagttgatat...

Basic information

species Glycine max
transcript GLYMA06G01180.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58019940|gb|CX706682.1|CX706682
EST:     NNNNNNNGTTGCAAAACTCTCATTCTGCTTCTAGACACTCAGATACAAAG                         GTGGATACTAAACGCCGTCGTAGGTAAAATAGTGTGATAGTATATAAAGCA
genomic: AAAAAAAGTTGCAAAACTCTCATTCTGCTTCTAGACACTCAGATACAAAGgtatttcaaa ... ggtattgcagGTGGATACTAAACGCCGTCGTAGGTAAAATAGTGTGATAGTATATAAAGCA
EST: gi|9985362|gb|BE659470.1|BE659470
EST:     NNNNNNNGTTGCAAAACTCTCATTCTGCTTCTAGACACTCAGATACAAAG                         GTGGATACTAAACGCCGTCGTAGGTAAAATAGTGTGATAGTATATAAAGCA
genomic: AAAAAAAGTTGCAAAACTCTCATTCTGCTTCTAGACACTCAGATACAAAGgtatttcaaa ... ggtattgcagGTGGATACTAAACGCCGTCGTAGGTAAAATAGTGTGATAGTATATAAAGCA
EST: gi|254336272|gb|GR842451.1|GR842451
EST:     NNNNNNNGTTGCAAAACTCTCATTCTGCTTCTAGACACTCAGATACAAAG                         GTGGATACTAAACGCCGTCGTAGGTAAAATAGTGTGATAGTATATAAAGCA
genomic: AAAAAAAGTTGCAAAACTCTCATTCTGCTTCTAGACACTCAGATACAAAGgtatttcaaa ... ggtattgcagGTGGATACTAAACGCCGTCGTAGGTAAAATAGTGTGATAGTATATAAAGCA
EST: gi|58022943|gb|CX709684.1|CX709684
EST:     NNNNNNNGTTGCAAAACTCTCATTCTGCTTCTAGACACTCAGATACAAAG                         GTGGATACTAAACGCCGTCGTAGGTAAAATAGTGTGATAGTATATAAAGCA
genomic: AAAAAAAGTTGCAAAACTCTCATTCTGCTTCTAGACACTCAGATACAAAGgtatttcaaa ... ggtattgcagGTGGATACTAAACGCCGTCGTAGGTAAAATAGTGTGATAGTATATAAAGCA
EST: gi|31462782|gb|CD404810.1|CD404810
EST:     CAAAAAAGTTGCCAAACTCTCATTCTGCTTCTAGACACTCAGATACANAG                         GTGGATACTAAACGCCGTCGTAGGTAAAATAGTGTGATAGTATATAAAGCA
genomic: AAAAAAAGTTGCAAAACTCTCATTCTGCTTCTAGACACTCAGATACAAAGgtatttcaaa ... ggtattgcagGTGGATACTAAACGCCGTCGTAGGTAAAATAGTGTGATAGTATATAAAGCA
EST: gi|17401428|gb|BM178210.1|BM178210
EST:     NNNNNNNGTTGCAAAACTCTCATTCTGCTTCTAGACACTCAGATACAAAG                         GTGGATACTAAACGCCGTCGTAGGTAAAATAGTGTGATAGTATATAAAGCA
genomic: AAAAAAAGTTGCAAAACTCTCATTCTGCTTCTAGACACTCAGATACAAAGgtatttcaaa ... ggtattgcagGTGGATACTAAACGCCGTCGTAGGTAAAATAGTGTGATAGTATATAAAGCA