Sequence
atgc intronic sequence ATGC exonic sequenceCATTATCAAAGGGATATTGTCCGCGGTGTGGAAGGTTATATTGTAACTGGATCCAAGCAAGTTGAAATAGgtcagtaattttggttggtgaaatttcctttgcagttagtttatggaacatagtgtatgccatatatttcatgtgtgcaagagaagaaaaagttgggtgg...
Basic information
species | Glycine max |
transcript | GLYMA06G01120.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G01120.2 (Glycine max), 5'ss of exon 3
lower sequence: AT4G34660.2 (Arabidopsis thaliana), 5'ss of exon 3
CATTATCAAAGGGATATTGTCCGCGGTGTGGAAGGTTATATTGTAACTGGATCCAAGCAAGTTGAAATAGgtcagtaattttggttggtgaaatttcctttgcagttagtttatggaacatagtgtatgccatatatttcatgtgtgcaagagaagaaaaagttgggtgg-----------------
||||| ||||| |||||||| || ||||||||||||||||| || || || || || ||||||||||||||| | | ||| ||| ||| || || ||| | ||| || ||| | || | || | || | | |
CATTACCAAAGAGATATTGTTCGTGGTGTGGAAGGTTATATAGTTACAGGGTCAAAACAAGTTGAAATAGgtgatttttttgaccctttgagttttaacttattgtattttttta--------tgtctgttatagacttgaattggctcacaggcctgtctttcattttgcactcatttttcatcag
upper sequence: GLYMA06G01120.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0001g13530.t01 (Vitis vinifera), 5'ss of exon 3
CATTATCAAAGGGATATTGTCCGCGGTGTGGAAGGTTATATTGTAACTGGATCCAAGCAAGTTGAAATAGgtcagtaattttggttggtgaaatttcctttgcagttagtttatggaacatagtgtatgccatatatttcatgtgtgcaagagaagaaaaagttgggtgg
|||| ||||||||||||||||| ||||||||||||| || || ||||| ||||||||||||||||||||| || | | || | |||||||| | || || || | | | | ||| || | | ||||| || ||
CATTTCCAAAGGGATATTGTCCGTGGTGTGGAAGGTTTCATAGTTACTGGGTCCAAGCAAGTTGAAATAGgtgagctgctgagactgtt----tttcctttattggtatttcatttcatgctgc-tttttcat---ttacgtacttgcaatctttataacag--------
upper sequence: GLYMA06G01120.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0038g00460.t01 (Vitis vinifera), 5'ss of exon 3
CATTATCAAAGGGATATTGTCCGCGGTGTGGAAGGTTATATTGTAACTGGATCCAAGCAAGTTGAAATAGgtcagtaattttggttggtgaaatt-tcctttgcagttagtttatggaacatagtgtatgccatatatttcatgtgt-gcaagagaagaaaaagttgggtgg
|||| ||||||||||||||| || ||||| ||||||| ||| || ||||| ||||| ||||||||||||||| || | | ||| || | ||| | ||| | | | | | | | | ||| | ||| | || ||| |
CATTTTCAAAGGGATATTGTTCGTGGTGTAGAAGGTTTTATCGTTACTGGGTCCAAACAAGTTGAAATAGgtgtgttggtgaaacttttgattttgttttttactattataattcaaatgaatgcaaaggacttgactttgttttgttgtgtactgtcaacttgtttttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193633792|gb|FK582426.1|FK582426EST: CCGTGGTGTGGAAGGTTATATTGTAACTGGATCCAAGCAAGTTGAAATAG GAACAAAGTTATCAGAAGATAACAGGAAATATGGTGCAGATAATACGTGTA
genomic: CCGCGGTGTGGAAGGTTATATTGTAACTGGATCCAAGCAAGTTGAAATAGgtcagtaatt ... tgtttaacagGAACAAAGTTATCAGAAGATAGCAGGAAATATGGTGCAGATAATACATGTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATTATCAAAGGGATATTGTCCGCGGTGTGGAAGGTTATATTGTAACTGGATCCAAGCAAGTTGAAATAGgtcagtaattttggttggtgaaatttcctttgcagttagtttatggaacatagtgtatgccatatatttcatgtgtgcaagagaagaaaaagttgggtgg
- - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG