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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATGGGCTCCTCGGGAAGCACTGGAGAAACGTGGGCTTGGCCTTCAACTGCACATTTCTTCTATTTGGATCTGTTATCCAACTCATAGCTTGTGCAAGgtatcatctaacattatcaattcaattctaactccaatgcagtgtgagtatgagtctacatcgatccttgctctaactctttcttcagtactgtttatca...

Basic information

species Glycine max
transcript GLYMA06G00690.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G00690.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g14080.1 (Oryza sativa), 5'ss of exon 3
TTGATGGGCTCCTCGGGAAGCACTGGAGAAACGTGGGCTTGGCCTTCAACTGCACATTTCTTCTATTTGGATCTGTTATCCAACTCATAGCTTGTGCAAGgtat-catctaacattatcaattcaattctaactccaatgcagt-gtgagtatgagtctacatcgatccttgctctaactctttcttcagtactgtttatca
| || || || || |||| ||| ||||||||||| ||| |||||||||||||||| || || || || || || || ||||| ||||| || || || |||||   | ||     ||  ||  | | |  |     |||| | |  | |||||  || |       |  ||  | |      |   | ||| | |       
TGGACGGCCTGCTGGGGAGGCATTGGAGAAACGTCGGCCTGGCCTTCAACTGCACCTTCCTACTCTTCGGCTCCGTCATCCAGCTCATCGCCTGCGCTAGgtacgtacctgcagctactaaagccactgaagtctgaatgtactcattagtatctgttttagcgtctgttttatgtgtacaatgtgtgagtgcag-------

upper sequence: GLYMA06G00690.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G045057_T02 (Zea mays), 5'ss of exon 3
TTGATGGGCTCCTCGGGAAGCACTGGAGAAACGTGGGCTTGGCCTTCAACTGCACATTTCTTCTATTTGGATCTGTTATCCAACTCATAGCTTGTGCAAGgtatcatctaacattatcaattcaattctaactccaatgcagtgtgagtatgagtctacatcgatccttgctctaactctttcttcagtactgtttatca------------------------------------------------------------------------------------------
| |||||||| || |||||||||||||| ||||| ||| |   |||||||||||| || || || || || || || ||||| ||||| || |||||||||||  |||   ||||      |  ||||  |  |      |       |||     ||   | |||   ||| |  ||  ||  | | | |      | |                                                                                          
TGGATGGGCTACTGGGGAAGCACTGGAGGAACGTCGGCCTCTTCTTCAACTGCACTTTCCTCCTCTTCGGCTCCGTCATCCAGCTCATCGCATGTGCAAGgta--atcatccattcatgcctacattcgcatccatcgataaaactcatatacaattaacacaatcaaagcttttcctaattaataactgcaagcattaaaagtgtagtgtaatcgatcttgtaattacgctctgatctagctacctatatatgagtgatccatggatcgatatatacatatatgagcag

upper sequence: GLYMA06G00690.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G21050.1 (Arabidopsis thaliana), 5'ss of exon 3
TTGATGGGCTCCTCGGGAAGCACTGGAGAAACGTGGGCTTGGCCTTCAACTGCACATTTCTTCTATTTGGATCTGTTATCCAACTCATAGCTTGTGCAAGgtatcatctaacattatcaattcaattctaactccaatgcagtgtgagtatgagtctacatcgatccttgctctaactctttcttcagtactgtttatca
|||||||  | || |||||||| ||||| || || || || ||||| |||||||| || ||||| ||||||||||| || ||||||||||||||||| |||||   | ||    || ||||||  |  | |    |||| ||  | |  |||    |   |  ||  |   |  |  | ||  | |||            
TTGATGGATTGCTTGGGAAGCATTGGAGGAATGTTGGTTTAGCCTTTAACTGCACCTTCCTTCTCTTTGGATCTGTCATTCAACTCATAGCTTGTGCCAGgtactttata----taccaattctttcttcaggaaaatg-agactaatgatgtag-tggtttaatggtaagtgaatgtgttgttgcag------------

upper sequence: GLYMA06G00690.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0038g02140.t01 (Vitis vinifera), 5'ss of exon 3
TTGATGGGCTCCTCGGGAAGCACTGGAGAAACGTGGGCTTGGCCTTCAACTGCACATTTCTTCTATTTGGATCTGTTATCCAACTCATAGCTTGTGCAAGgtatca---tctaacattatcaattcaattctaactccaatgcagtgtgagtatgagtctacatc---gatccttgctctaactctttcttcagtactgtttatca---------------------------------------------------------------
|||||||||| || || || |||||||| |||||||| ||||| ||||||||||| |||||||| |||||||| || || ||||||||||||||||| ||| |||    |||  |  |  | || |   ||  ||| | |  |  | |   | |   |||   ||   |   |||| | |  ||    |  |   | | ||| |                                                                 
TTGATGGGCTGCTTGGCAAACACTGGAGGAACGTGGGGTTGGCTTTCAACTGCACTTTTCTTCTGTTTGGATCCGTGATTCAACTCATAGCTTGTGCCAGgcatctccctctctccctccctatcctcctcctactactactctctctctctctctctctctttctctgtctcttgttttttcttcacccaccacatttttttttcctttctttacaataaacaaagatctgaggcattttctgcaactgggcatgtcgtttgttgcag