1 5' 3' | 2 5' 3' | 3 5' 3' |
GCTCTCTACCATGACGGCTCTCGACAACCTTGGACTAGACATTCAGCAGGCAGTTATCAGCTATGTCAATGGATTTGCTATGGATATTTTCAGAGCTGAGgtgattttttttattctttaatcattaattatcattataaaatcaaaccatgtgcatccagctcattaggtttttagatatattagcattaaaattcgtg...
species | Glycine max |
transcript | GLYMA05G38530.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAGTTATCAGCTATGTCAATGGATTTGCTATGGATATTTTCAGAGCTGAG CAACGCAACGAAGGTCAGGATGTCCATCCGGAACAAATCAAAGCGGTTTTGEST: gi|7234435|gb|AW569772.1|AW569772
genomic: CAGTTATCAGCTATGTCAATGGATTTGCTATGGATATTTTCAGAGCTGAGgtgatttttt ... ttcttttcagCAACGCAACGAAGGTCAGGATGTCCATCCGGAACAAATCAAAGCGGTTTTG
EST: CAGTTATCAGCTATGTCAATGGATTTGCTATGGATATTTTCAGAGCTGAG CAACGCAACGAAGGTCAGGATGTCCATCCGGAACAAATCAAAGCGGTTTTGEST: gi|192305197|gb|FG997505.1|FG997505
genomic: CAGTTATCAGCTATGTCAATGGATTTGCTATGGATATTTTCAGAGCTGAGgtgatttttt ... ttcttttcagCAACGCAACGAAGGTCAGGATGTCCATCCGGAACAAATCAAAGCGGTTTTG
EST: CAGTTATCAGCTATGTCAATGGATTTGCTATGGATATTTTCAGAGCTGAG CAACGCAACGAAGGTCAGGATGTCCATCCGGAACAAATCAAAGCGGTTTTG
genomic: CAGTTATCAGCTATGTCAATGGATTTGCTATGGATATTTTCAGAGCTGAGgtgatttttt ... ttcttttcagCAACGCAACGAAGGTCAGGATGTCCATCCGGAACAAATCAAAGCGGTTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCTCTACCATGACGGCTCTCGACAACCTTGGACTAGACATTCAGCAGGCAGTTATCAGCTATGTCAATGGATTTGCTATGGATATTTTCAGAGCTGAGgtgattttttttattctttaatcattaattatcattataaaatcaaaccatgtgcatccagctcattaggtttttagatatattagcattaaaattcgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA