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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTACAGACCCCTCCGTGCTTCTCATTGTTCAGTCTGTGATAACTGCGTGGAGCGATTTGATCATCACTGCCCATGGGTTGGTCAGTGTATTGGACTGgtaacaaccattctttcataacttcacatttatggtatccaaggaacactatacacaggttatatacatagccctagattccgatactggcatttgaatt...

Basic information

species Glycine max
transcript GLYMA05G38360.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G38360.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os09g33450.2 (Oryza sativa), 5'ss of exon 4
GCTCTACAGACCCCTCCGTGCTTCTCATTGTTCAGTCTGTGATAACTGCGTGGAGCGATTTGATCATCACTGCCCATGGGTTGGTCAGTGTATTGGACTGgtaacaaccat----tctttcataacttcacatttatggtatccaaggaacactatacacaggttatatacatagccctagattccg-atactggcatttgaatt------------------------------------------------------------------------------------
||| ||| | || |  ||    ||||| |||||  | ||| ||||||| |||||||| ||||||||||||||||| |||||||| || || ||||||  |||||  | | |    | ||  |    || | || |      | |||  | |   |      | |   ||     |   |    || | ||||      ||| |||                                                                                    
GCTGTACCGGCCACCTCGATGCTCTCACTGTTCTATATGTAATAACTGTGTGGAGCGTTTTGATCATCACTGCCCTTGGGTTGGGCAATGCATTGGAAGGgtaagtatcttgatgtgttggaaggtttaagatatccttattgcaattagcttgaagatttgatatcatgtgcggtgttgtggtctgtatacctcttgttggattttctatattagatattagtagattgttagttactactttaaagttttaacaagtcagcgctaattatcaacttatctgctgcag

upper sequence: GLYMA05G38360.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g70100.1 (Oryza sativa), 5'ss of exon 3
GCTCTACAGACCCCTCCGTGCTTCTCATTGTTCAGTCTGTGATAACTGCGTGGAGCGATTTGATCATCACTGCCCATGGGTTGGTCAGTGTATTGGACTGgtaacaaccattctttcataacttc---acatttatggtatccaaggaacactatacacaggttatatacatagccctagattccgatactggcatttgaatt
||| ||| | || |  |||   || ||||| ||  ||||  | |||||||| || || ||||| |||||||||||||||||||| || || || ||||| ||||    ||| | |    || |     | | ||      |   |  |||  |||  || | |  | |     |    ||     ||       || ||  | 
GCTGTACCGGCCTCCTCGTTGCTCCCATTGCTCTATCTGCAACAACTGCGTTGAACGTTTTGACCATCACTGCCCATGGGTTGGGCAATGCATAGGACTTgtaa-gttcatacatatgcaaatctgataaaattccctacttacataaactgtatgtactgat-gtgttagccgtttcagtccatgaggagtttatctgctt-

upper sequence: GLYMA05G38360.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os08g42370.3 (Oryza sativa), 5'ss of exon 3
GCTCTACAGACCCCTCCGTGCTTCTCATTGTTCAGTCTGTGATAACTGCGTGGAGCGATTTGATCATCACTGCCCATGGGTTGGTCAGTGTATTGGACTGgtaacaaccattctttc---ataacttcacatttatggt-atccaaggaacactatacacaggttatatacatagccctagattccgatactggcatttgaatt----------------------------------------------
||| ||| | || |  ||    || || |||||  | ||  | ||||| ||||| || |||||||||||||| ||||||||||| || || || ||||| ||||  | |||  |||      |  |    |  |||  | | |  |||||    ||   |   || | |    ||   |   ||||  | ||     ||||  |                                              
GCTTTACCGGCCACCTCGATGCTCACACTGTTCGATATGCAACAACTGTGTGGAACGGTTTGATCATCACTGTCCATGGGTTGGCCAATGCATAGGACTTgtaagtatcatgtttttccagcagttctgtacctatccttaccgtaggaaagacatgtgcgtatt-tgtttggagttattc-ttccagtgcttttcattgagctctcttcaaatcaacttgagcctaatcataaagcatatttggtgcag

upper sequence: GLYMA05G38360.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G034833_T02 (Zea mays), 5'ss of exon 3
GCTCTACAGACCCCTCCGTGCTTCTCATTGTTCAGTCTGTGATAACTGCGTGGAGCGATTTGATCATCACTGCCCATGGGTTGGTCAGTGTATTGGACTGgtaacaaccattctttcataacttcacatttatggtatccaaggaacactatacacaggttatatacatagccctagattccgatactggcatttgaatt-
| | ||||| || |  |||   || ||||| ||  ||||  | |||||||||||||| ||||| |||||||||||||||||||| || || || || || ||||     |||   | |  ||||   | | |      |       |  |  | | |   ||| |    | | ||  ||    |  ||  ||      |  
GTTGTACAGGCCTCCTCGTTGCTCCCATTGCTCTATCTGCAACAACTGCGTGGAGCGTTTTGACCATCACTGCCCATGGGTTGGACAATGCATAGGGCTTgtaa-gtttattaactaagcacttgtgactcagaaagcctgtattgctgttgatatacaatatttcgccaacactttatgttaaatctcacagccccctgt

upper sequence: GLYMA05G38360.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G068657_T02 (Zea mays), 5'ss of exon 3
GCTCTACAGACCCCTCCGTGCTTCTCATTGTTCAGTCTGTGATAACTGCGTGGAGCGATTTGATCATCACTGCCCATGGGTTGGTCAGTGTATTGGACTGgta----acaaccattctttcataacttcacat---ttatggtatc-caaggaacactatacacaggttatatacatagccctagattccgatactggcatttgaatt---------------------------------------
| | ||| |||| |  ||    || || |||||  | ||  ||||||| ||||| || |||||||||||||| |||||||| || ||||| || |||||||||    |||     |   |      |||| |    |  |  |||  |  | |    |||  | || |  |||   | |    |  ||     | ||     | | ||                                       
GTTGTACCGACCACCTCGATGCTCACACTGTTCCATTTGCAATAACTGTGTGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTGgtaagttacacaagattactaggtgtttcataggcgtcctcatattacttgaattgatatttagagctactatttctgggtacattttttttgaatgttgactaactttctattttgttaagactgaccatcaatgtatttgtgcag

upper sequence: GLYMA05G38360.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G821611_T01 (Zea mays), 5'ss of exon 3
GCTCTACAGACCCCTCCGTGCTTCTCATTGTTCAGTCTGTGATAACTGCGTGGAGCGATTTGATCATCACTGCCCATGGGTTGGTCAGTGTATTGGACTGgtaacaaccattctttcataacttcacatttatggtatccaaggaacactatacacaggttatatacatagccctagattccgatactggcatttgaatt--------------------------------------------------------------------------------
||| ||| |||| |  ||    || || |||||  | ||  ||||||| ||||| || |||||||||||||| |||||||| || ||||| || ||||||||||    |      |  || ||     || || |  |||    |  |  | |  |  | | |  |||||  | |  |||  |||  | | |  |    |                                                                                
GCTGTACCGACCACCTCGATGCTCACACTGTTCCATTTGCAATAACTGTGTGGAACGGTTTGATCATCACTGTCCATGGGTCGGCCAGTGCATAGGACTGgtaagttactcgagatgctagct--gttttaatagcgtccttatattagaacaatcgcggtgtgcacatacacttgaatt--gatgtttggaggtactctttctgggtagattttcatttttttaagttgttgactaactttctattctgttaagcctgatcatcaacatatttgtgcag

upper sequence: GLYMA05G38360.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G48760.1 (Arabidopsis thaliana), 5'ss of exon 3
GCTCTACAGACCCCTCCGTGCTTCTCATTGTTCAGTCTGTGATAACTGCGTGGAGCGATTTGATCATCACTGCCCATGGGTTGGTCAGTGTATTGGACTGgtaacaaccattctttcataacttcacatttatggtatccaaggaacactatacacaggttatatacatagccctagattccgatactggcatttgaatt----
||| |||||||| | ||||||||||||||||||  | ||  | |||||||| |||   |||||||| ||||| || ||| |||||||||| |||||| ||||||     ||| |||     | ||| |   |    ||   |    || |||||  ||   ||  | | ||      |     ||   ||  |||  |||    
GCTTTACAGACCGCCCCGTGCTTCTCATTGTTCGATTTGCAACAACTGCGTCGAGAAGTTTGATCACCACTGTCCTTGGCTTGGTCAGTGCATTGGATTGgtaatggatattttttttcctcatcaaa---aaccaattacaattgca-tatacctagacgattca-agagtaactaacagttatttgggggttttgattgcag

upper sequence: GLYMA05G38360.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv17s0000g00800.t01 (Vitis vinifera), 5'ss of exon 3
GCTCTACAGACCCCTCCGTGCTTCTCATTGTTCAGTCTGTGATAACTGCGTGGAGCGATTTGATCATCACTGCCCATGGGTTGGTCAGTGTATTGGACTGgtaacaaccattctttcataacttcacatttatggtatccaaggaacactatacacaggttatatacatagcccta---gattccgatactggcatttgaatt
||| || ||||| |  ||   ||| || |||||| | ||  |||| || ||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||  | ||||||||  |||||  |     ||| | || ||     | |  |  |   | | | | |  ||  ||   ||  |      ||   | |  |||
GCTTTATAGACCTCCTCGCTGTTCACACTGTTCAATATGCAATAATTGTGTGGAACGATTTGACCATCACTGCCCTTGGGTTGGTCAATGTATTGGACTGgtaatgaacattcttt--taactgtat-cacatgctttctaaatgtaaattaatgccattgacaaatactgcattatgggaacctagatttgttgtctttatt