1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGTTGTTGGAAGACGAGCAGAAGCAGAAGACTGCCATGGAGTTGCTCGAACAGTACATGCAATTCAAACAAGAGGCAGAAAAAGAGGGCAAGAAGAACAAgtaagttatatatatatacctccctttggaccattcttctatgttgtgtggttattgatgttagttttacatgtacatgtacatgttcacag
species | Glycine max |
transcript | GLYMA05G37010.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGAGGGCAAGAAGAACAA GAAAGAGAAGGATCCATTGAAACCGAAGCACCCCATGTCAGCTTATTTCTTEST: gi|208043286|gb|GD840004.1|GD840004
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGAGGGCAAGAAGAACAAgtaagttata ... atgttcacagGAAAGAGAAGGATCCATTGAAACCGAAGCACCCCATGTCAGCTTATTTCTT
EST: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGAGGGCAAGAAGAACAA GAAAGAGAAGGATCCATTGAAACCGAAGCACCCCATGTCAGCTTATTTCTTEST: gi|207764521|gb|GD735844.1|GD735844
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGAGGGCAAGAAGAACAAgtaagttata ... atgttcacagGAAAGAGAAGGATCCATTGAAACCGAAGCACCCCATGTCAGCTTATTTCTT
EST: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGAGGGCAAGAAGAACAA GAAAGAGAAGGATCCATTGAAACCGAAGCACCCCATGTCAGCTTATTTCTTEST: gi|193569245|gb|FK526598.1|FK526598
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGAGGGCAAGAAGAACAAgtaagttata ... atgttcacagGAAAGAGAAGGATCCATTGAAACCGAAGCACCCCATGTCAGCTTATTTCTT
EST: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGAGGGCAAGAAGAACAA GAAAGAGAAGGATCCATTGAAACCGAAGCACCCCATGTCAGCTTATTTCTT
genomic: CAGTACATGCAATTCAAACAAGAGGCAGAAAAAGAGGGCAAGAAGAACAAgtaagttata ... atgttcacagGAAAGAGAAGGATCCATTGAAACCGAAGCACCCCATGTCAGCTTATTTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTGTTGGAAGACGAGCAGAAGCAGAAGACTGCCATGGAGTTGCTCGAACAGTACATGCAATTCAAACAAGAGGCAGAAAAAGAGGGCAAGAAGAACAAgtaagttatatatatatacctccctttggaccattcttctatgttgtgtggttattgatgttagttttacatgtacatgtacatgttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC