Sequence
atgc intronic sequence ATGC exonic sequenceTCTTGCCGGAGAAACCGCCGCCGCTATGGCCGCTGCCTCCATTGTTTTCCGACGCTCTAACCCTGCCTATGCCGCCGAACTCCTCCGCCATGCCTACCAGgtagtacacactactagcttttacgctttcgtatggtatataatttaattagatgtgcgcattgtagtgtagaaagtggacaaacagtgaagcgtggtgc...
Basic information
species | Glycine max |
transcript | GLYMA05G36930.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G36930.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G11050.1 (Arabidopsis thaliana), 5'ss of exon 3
TCTTGCCGGAGAAACCGCCGCCGCTATGGCCGCTGCCTCCATTGTTTTCCGACGCTCTAACCCTGCCTATGCCGCCGAACTCCTCCGCCATGCCTACCAGgtagt-acacacta-ctagcttttacgctttcgtatggtatataatttaattagatgtgcgca-ttgtagtgtagaa-agtggacaaacagtgaagcgtggtgc
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TCTCGCCGGAGAAACCGCTGCCGCAATGGCTGCCGCTTCCATCGTTTTCCGTCGCTCTGATCCATCATACTCTGCTGAGCTACTCCGTCACGCACATCAGgttcttgaaccctaaccaaaactgagaaaatcg---agtttcaattccggtttagtgaaaccaattttaattaagcacattgttctgtttatacaattttcaa-
upper sequence: GLYMA05G36930.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G64390.1 (Arabidopsis thaliana), 5'ss of exon 3
TCTTGCCGGAGAAACCGCCGCCGCTATGGCCGCTGCCTCCATTGTTTTCCGACGCTCTAACCCTGCCTATGCCGCCGAACTCCTCCGCCATGCCTACCAGgtagtacacactactagcttttacgctttcgtatggtatataatttaattagatgtgcgcattgtagtgtagaaagtggacaaacagtgaagcgtggtgc----
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TCTTGCCGGAGAAACAGCAGCCGCCATGGCCGCCGCATCAATTGTTTTCCGCCGATCTAACCCTGTTTACTCTAGGCTACTACTCACTCACGCCTATCAGgtaaaaaacttt-ttatttccggcgcctttttactac-tattgaggaagcttacgttagcat-aaagtgtgggta-tatttaattactacaggcagttacgttt
upper sequence: GLYMA05G36930.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0025g01380.t01 (Vitis vinifera), 5'ss of exon 5
TCTTGCCGGAGAAACCGCCGCCGCTATGGCCGCTGCCTCCATTGTTTTCCGACGCTCTAACCCTGCCTATGCCGCCGAACTCCTCCGCCATGCCTACCAGgtagtacacactactagcttttacgctttcgtatggtatataatttaattagatgtgcgcattgtagtgtag---aaagtg-gacaaacagtgaagcgtggtgc-
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CCTTGCCGGAGAGACCGCCGCCGCCATGGCCGCCGCCTCTATTGTCTTCCGCCGTTCCAACCCTTCCTACGCCAATGAGCTTCTGACCCATGCTCGACAGgtt---catctctccctctctctctctctctctctctcaaacacatagtctgtttggcgcatgttagcacagtctaccgtgcgccgagcagttgagcg--gtcctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21677228|gb|BQ629579.1|BQ629579EST: GACGCTCTAACCCTGCCTATGCCGCCGAACTCCTCCGCCATGCCTACCAG CTATTTGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATTACG
genomic: GACGCTCTAACCCTGCCTATGCCGCCGAACTCCTCCGCCATGCCTACCAGgtagtacaca ... tcaatttcagCTATTTGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATTACG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTTGCCGGAGAAACCGCCGCCGCTATGGCCGCTGCCTCCATTGTTTTCCGACGCTCTAACCCTGCCTATGCCGCCGAACTCCTCCGCCATGCCTACCAGgtagtacacactactagcttttacgctttcgtatggtatataatttaattagatgtgcgcattgtagtgtagaaagtggacaaacagtgaagcgtggtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC