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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgtaatccaactctaaattgagtaattaggttatctaatcataaattgtttatacagataattactatcttacaagtcatactgatgataaca...

Basic information

species Glycine max
transcript GLYMA05G36700.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36700.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G860590_T01 (Zea mays), 5'ss of exon 3
GCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgtaatccaactctaaattgagtaattaggttatctaatcataaattgtttatacagataattactatcttacaagtc-atactgatgataaca----
|||||||| || |||||  | || || |||||| ||||||||||||| ||||||||||| || || || || ||||| ||||||||| |    | ||||||  | | |  |  |  | ||  | | | ||  |  ||| |  || || ||| |  ||||   |  | |  ||  | |  | || |    
GCTGCAAGCTTCGGAGGATCCAACATCGATCCAGCAGCTTGGGAGGACAAGAAGTGCCCCGGCGAGTCCCGCTTCCCTGCTCAGgtatc----tgatccaatccaacagaggatgctcagcctctatgattgtccattttacatgca-atactagctatagaatgacttgattgtcaaaagaaaaaatg

upper sequence: GLYMA05G36700.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0025g01720.t01 (Vitis vinifera), 5'ss of exon 3
GCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgta-acactgtaatccaact-------ctaaattgagtaattaggttatctaatcataaattgtttatacagataattactatcttacaagtcatactgatgataaca
|||||||| |||||||| ||||| ||||||||| | ||||||||||| |||||||||||||| ||||| || ||||| ||||||||     ||  ||||  |||       | ||| || ||| || || || ||| |||| ||  |   ||   | |        |  || | | |  |   ||       
GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAGgtctgttctccaatcttacttgatctgccaaactgtgtagttgggcta-ctagtcatcaaaggcaaatttggtttggggtctttgtatatggc-catgaatt------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193362190|gb|FK323978.1|FK323978
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|193534515|gb|FK491129.1|FK491129
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|208241728|gb|GE040152.1|GE040152
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|207842143|gb|GD816729.1|GD816729
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|193448309|gb|FK411886.1|FK411886
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|17401179|gb|BM177961.1|BM177961
EST:     CAGCTTGGGAGGA-AAGAA-AGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|208324224|gb|GE120555.1|GE120555
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|208117763|gb|GD914645.1|GD914645
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|193382250|gb|FK348023.1|FK348023
EST:     AGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCANG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTT
genomic: AGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCA-Ggtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTT
EST: gi|208251244|gb|GE045999.1|GE045999
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCNCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|193396423|gb|FK362779.1|FK362779
EST:     CTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
genomic: CTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|254324039|gb|GR840464.1|GR840464
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|193372274|gb|FK338291.1|FK338291
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|208045305|gb|GD841113.1|GD841113
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|208162411|gb|GD963142.1|GD963142
EST:     AGCTTGGAGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACT
genomic: AGCTTGG-GAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACT
EST: gi|192302668|gb|FG996348.1|FG996348
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|208142642|gb|GD943998.1|GD943998
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|298192580|gb|HO033014.1|HO033014
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCTCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|208102194|gb|GD899175.1|GD899175
EST:     TTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: TTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|254315467|gb|GR825276.1|GR825276
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|6454117|gb|AW184865.1|AW184865
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTATGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|254315468|gb|GR825277.1|GR825277
EST:     GAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
genomic: GAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|298199163|gb|HO042526.1|HO042526
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|208032502|gb|GD828971.1|GD828971
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|10254440|gb|BE822206.1|BE822206
EST:     CAGCTTGGGAGNNTAAGAAGTGCCNTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|208196852|gb|GD997947.1|GD997947
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAA
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAA
EST: gi|16105888|gb|BI893628.1|BI893628
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|207797893|gb|GD768485.1|GD768485
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|208298239|gb|GE095428.1|GE095428
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|193313926|gb|FK282429.1|FK282429
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|193404208|gb|FK367788.1|FK367788
EST:     AAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
genomic: -AGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|208290682|gb|GE082354.1|GE082354
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|207765278|gb|GD737651.1|GD737651
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|208319360|gb|GE115929.1|GE115929
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|207707463|gb|GD689271.1|GD689271
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|208341748|gb|GE135440.1|GE135440
EST:     GCTTGGGAGGGATAAGAAGTAGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
genomic: GCTTGGGAGG-ATAAGAAGT-GCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|193686675|gb|FK626082.1|FK626082
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|208307726|gb|GE104954.1|GE104954
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|298194369|gb|HO041017.1|HO041017
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|193317512|gb|FK285328.1|FK285328
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|193670484|gb|FK611572.1|FK611572
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|207795128|gb|GD764417.1|GD764417
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|193398900|gb|FK362582.1|FK362582
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|5760821|gb|AI966184.1|AI966184
EST:     CAGCTTGNGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTANGAAAACTTGTGAACCACTGGAGGAAGAATCCT-C
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC
EST: gi|207752217|gb|GD724546.1|GD724546
EST:     CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAG                         GTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAGGATTCCTTC
genomic: CAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgt ... atgattgcagGTACGAGTGATAACTAGGAAAACTTGTGAACCACTGGAGGAAGATTCCTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGCAAGTTTTGGAGGGACAAATATTGATCCATCAGCTTGGGAGGATAAGAAGTGCCCTGGTGAATCTCGTTTCCCCGCTCAGgtaacactgtaatccaactctaaattgagtaattaggttatctaatcataaattgtttatacagataattactatcttacaagtcatactgatgataaca

- - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT