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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGGCTTTGTCTCACAGGAATGAAGGCCCCAAGAAGGCTTCAAGACCATGGGACAAAGATCGTGATGGTTTTGTGATGGGTGAAGGCTCTGGTGTGCTGgtagaaccttgaacccaaaattttcttttacaccatatgcatcttttgctagcaattctaaagcaatatggcttaacaagtttttgttttaacttacttttgttcacctaatgacaacttgattctctatcaccggaaaaaaaaaaaag

Basic information

species Glycine max
transcript GLYMA05G36690.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36690.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0025g01730.t01 (Vitis vinifera), 5'ss of exon 3
CAGGGCTTTGTCTCACAGGAATGAAGGCCCCAAGAAGGCTTCAAGACCATGGGACAAAGATCGTGATGGTTTTGTGATGGGTGAAGGCTCTGGTGTGCTGgtagaaccttgaacccaaaattttctt--ttacaccatatgcatcttttgctagcaattctaaagcaatatggcttaacaagtttttgttttaacttacttttgttcacctaatgacaacttgattctctatcaccggaaaaaaaaaaaag
  ||||||||||||| || ||||| | |||  |||| || || |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||  | |   ||    |  || ||||  ||||   || |||   | ||| || ||| ||      | |   | |   |    | || |||| | ||  |||||   || | ||    |||    ||  | |||  |  |||||       
TCGGGCTTTGTCTCAAAGAAATGAGGACCCTCAGAAAGCCTCTAGACCATGGGACAAAGATCGTGATGGCTTTGTCATGGGAGAAGGCTCTGGTGTGCTGgtaataac--aaaattgatgttgtcttcattacttgatttgctagtattg-taacaactc------atttatgttaggctgcatcttattttcatttgattttggg-acttcatatttactaagctcggt-tcattgtcaaaaag------

upper sequence: GLYMA05G36690.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S52_45V6.1 (Physcomitrella patens), 5'ss of exon 3
CAGGGCTTTGTCTCACAGGAATGAAGGCCCCAAGAAGGCTTCAAGACCATGGGACAAAGATCGTGATGGTTTTGTGATGGGTGAAGGCTCTGGTGTGCTGgta-gaaccttgaacccaaaattttcttttacaccatatgcatctt---ttgctagcaattcta------aagcaatatggcttaacaagtttttgttttaa---cttacttttgttcacctaatgacaacttgattctctatcaccggaaaaaaaaaaaag
|||||||||||||   || |||||  | ||  | |  || || ||||| |||||||| |||||||| ||||| |||||||| || ||  |||||||||||||| | |  | |  ||      ||| ||     |  ||  | |      | | |    ||| |       ||||  | ||  |  |  ||||   | |   |   |||  |||||| |    | ||  || |    |    |||    ||   |  ||    
CAGGGCTTTGTCTACGAGAAATGACAGTCCACAAACTGCCTCCAGACCTTGGGACAAGGATCGTGAAGGTTTCGTGATGGGCGAGGGTGCTGGTGTGCTGgtatgcatgtcggtcctgcttgtttgttggttgctgtagacttagcagatagttttggatttttgaaaccaagcggtgtgtgtagatcagttgcgggtaggattgcttgtttttgtgcgatca-tgctaattcttgtggtaatcgtttgatctatgaag---