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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCACGGGATTGATCATTTGGTGATTCCCACCAGAGATTATCTCTTTGCCCCCTCATTTGTGGATATCAACCGGGCTGTGCAGTTCATTCATCgtgggtgttttcttttcaatttaatttcgggaaagtgtggggtgtaaatgcatgtctatgtggttctttgttattttttggttgttggtggtgaaatatagtcgtatgtgtatttcctttgtattatggcag

Basic information

species Glycine max
transcript GLYMA05G36020.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36020.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0016g02890.t01 (Vitis vinifera), 5'ss of exon 4
GCTCACGGGATTGATCATTTGGTGATTCCCACCAGAGATTATCTCTTTGCCCCCTCATTTGTGGATATCAACCGGGCTGTGCAGTTCATTCATCgtgggtgttttcttttcaatttaatttcgggaaagtgtggggtg--taaatgcatgtctatgtggtt-----------ctttgttattttttggttgttggtggtgaaatatagtcgtatgtgtatttcctttgtattatggcag
||||| | ||| || ||  |||| |||||||| |||||||| || ||||| || |||||||||||||| | ||| |||||  | ||||||||| ||| |   ||  | ||  | || |  || |  |  | || | |   || ||||     | ||| |||            | | || ||||| |||| |   |  ||    | ||                               
GCTCATGAGATAGACCACCTGGTAATTCCCACAAGAGATTACCTTTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATAgtgagcaattcttctttgactttacatctgccagttctgtgattcttagatgccatggtgtgtagttgagatgaaagtttcttttctttttgggttttcccttctggggaacag-------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120533128|gb|EH261261.1|EH261261
EST:     CTTTGCCCCCTCATTTGTGGATATCAACCGGGCTGTGCAGTTCATTCATC                         AGAATGCAACTTGCGGTAAAACTACTTATGTTCACTGTAAAGCTGGTCGGG
genomic: CTTTGCCCCCTCATTTGTGGATATCAACCGGGCTGTGCAGTTCATTCATCgtgggtgttt ... attatggcagAGAATGCAACTTGCGGTAAAACTACTTATGTTCACTGTAAAGCTGGTCGGG
EST: gi|192302768|gb|FG993788.1|FG993788
EST:     CTTTGCCCCCTCATTTGTGGATATCAACCGGGCTGTGCAATTCATTCATC                         AGAATGCAACTTGCGGTAAAACTACTTATGTTCACTGTAAAGCTGGTCGGG
genomic: CTTTGCCCCCTCATTTGTGGATATCAACCGGGCTGTGCAGTTCATTCATCgtgggtgttt ... attatggcagAGAATGCAACTTGCGGTAAAACTACTTATGTTCACTGTAAAGCTGGTCGGG
EST: gi|15001047|gb|BI321861.1|BI321861
EST:     CTTTGCCCCCTCATTTGTGGATATCAACCGGGCTGTGCAGTTCATTCATC                         AGAATGCAACTTGCGGTAAAACTACTTATGTTCACTG
genomic: CTTTGCCCCCTCATTTGTGGATATCAACCGGGCTGTGCAGTTCATTCATCgtgggtgttt ... attatggcagAGAATGCAACTTGCGGTAAAACTACTTATGTTCACTG
EST: gi|192294262|gb|FG986351.1|FG986351
EST:     CTTTGCCCCCTCATTTGTGGATATCAACCGGGCTGTGCAGTTCATTCATC                         AGAATGCAACTTGCGGTAAAACTACTTATGTTCACTGTAAAGCTGGTCGGG
genomic: CTTTGCCCCCTCATTTGTGGATATCAACCGGGCTGTGCAGTTCATTCATCgtgggtgttt ... attatggcagAGAATGCAACTTGCGGTAAAACTACTTATGTTCACTGTAAAGCTGGTCGGG
EST: gi|120533275|gb|EH261408.1|EH261408
EST:     CTTTGCCCCCTCATTTGTGGATATCAACCGGGCTGTGCAGTTCATTCATC                         AGAATGCAACTTGCGGTAAAACTACTTATGTTCACTGTAAAGCTGGTCGGG
genomic: CTTTGCCCCCTCATTTGTGGATATCAACCGGGCTGTGCAGTTCATTCATCgtgggtgttt ... attatggcagAGAATGCAACTTGCGGTAAAACTACTTATGTTCACTGTAAAGCTGGTCGGG