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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACCACAATATGTGTGCACAAATTTCTGGACGTTTGTTTGCACTAACTGTAGCGGAATACAgtaagtacttacaatctctttgcttatggtattattgttaaaatgtcttggctttgaggattgataaatagatattctttaaggtgctttggaaacccac...

Basic information

species Glycine max
transcript GLYMA05G35310.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G35310.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G043056_T01 (Zea mays), 5'ss of exon 3
GGACCACAATATGTGTGCACAAATTTCTGGACGTTTGTTTGCACTAACTGTAGCGGAATACAgtaagtacttacaa----tctctttgcttatggta---ttattgttaaaatgtc---ttggctttgaggattgataaatagatattctttaaggtgctttggaaacccac---------------------------------------------------
|||||||||||||| ||||||||||||||||| |||||||| || || || || |||  |||||||||| ||         ||||||   | | ||     ||||  |  |   ||   ||   ||||   |   ||| ||  ||||       | ||   || |    | |                                                   
GGACCACAATATGTCTGCACAAATTTCTGGACCTTTGTTTGTACCAATTGCAGTGGATCACAgtaagtattttagggagccctcttttactttagtcaacctatttatcgagcttcactttctttttgtttaacaatatatcaatatatgccttgatggaatgaactgtccccaagggaaatacgttggttttttcctaatatagatcactttatttttctag

upper sequence: GLYMA05G35310.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G341732_T02 (Zea mays), 5'ss of exon 4
GGACCACAATATGTGTGCACAAATTTCTGGACGTTTGTTTGCACTAACTGTAGCGGAATACAgtaagtactt------acaatctctttgcttatggtatta--ttgttaaaatgtcttggctttgaggattgataa-ata-gatattctttaaggtgct-ttggaaac-ccac--------------------------------------------------------
|||||||||||||  ||||||||||||||||| || ||||| || || || || |||  |||||||||| ||       |  ||| || | |||    |  |   | |  |    ||    ||||   | || | |  ||| |  ||  |  |  |   | ||||  || |||                                                         
GGACCACAATATGCCTGCACAAATTTCTGGACCTTCGTTTGTACCAATTGCAGTGGAGCACAgtaagtattttagtgtgccctcttttagtttagacgaccaatctatcgagccttcccttcttttttgtttaacagtatatggcatgatggagtgaattattgggcacaccagtcccctggtgaaatatgccagtctttttcctaatataaatcactttgttttcctag

upper sequence: GLYMA05G35310.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G13350.2 (Arabidopsis thaliana), 5'ss of exon 3
GGACCACAATATGTGTGCACAAATTTCTGGACGTTTGTTTGCACTAACTGTAGCGGAATACAgtaagtacttacaatctctttgcttatggtattattgttaaaatgtcttggctttgaggattgataaatagatattctttaaggtgctttggaaacccac
|||||||||||||| ||||| | ||||||||| |||||||| || ||||| || |||||||||| |||   |||  | ||||  | |||  |  | | | |    |   ||||   ||  | |||| | ||  ||||   ||   |  |             
GGACCACAATATGTTTGCACTACTTTCTGGACTTTTGTTTGTACCAACTGCAGTGGAATACAgtgagtg--tactttatcttctcatattcttgtgtagatggtgttcattggaaatgttgtttgagatatgcatatgtatttttgaacag-----------

upper sequence: GLYMA05G35310.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0016g04210.t01 (Vitis vinifera), 5'ss of exon 2
GGACCACAATATGTGTGCACAAATTTCTGGACGTTTGTTTGCACTAACTGTAGCGGAATACAgtaagtactta-caatctctttgctt-atggtattattgttaaaatgtcttggctttgaggattgataaatagatattctttaaggtgct--ttggaaacccac
||||| ||||| |||||||||||||||||||| ||||||||||| |  ||||| || ||||||||||| || |      | | || ||  ||  ||     |     |  ||    ||| |           | | |  | | |||| | ||  ||| |||     
GGACCGCAATACGTGTGCACAAATTTCTGGACATTTGTTTGCACAACTTGTAGTGGGATACAgtaagtgctaaattgcttatgtgttttgtgacatgcacctccctctagctctcttttcaattgcacattttggcttatgtctaagattctgattgtaaaa----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193365877|gb|FK328982.1|FK328982
EST:     GTGTGCACAAATTTCTGGACGTTTGTTTGCACTAACTGTAGCGGAATACA                         CCGAGAGTTTACACATCGGGTAAAATCAGTTTCAATGGCTAAATTTAGTGC
genomic: GTGTGCACAAATTTCTGGACGTTTGTTTGCACTAACTGTAGCGGAATACAgtaagtactt ... taatttccagCCGAGAGTTTACACATCGGGTAAAATCAGTTTCAATGGCTAAATTTAGTGC