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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTATAGGTGATGTACCAGTCATACTTGCAAAACCACAGACTTATATGAATTCAAGTGGTGAATCTgtaagtctgctatctggataatattcaaatgttatgtaagcaatagtattttattgtatctataatgactcatgtttattcttatgacatcaattctttt...

Basic information

species Glycine max
transcript GLYMA05G35220.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G35220.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g47630.1 (Oryza sativa), 5'ss of exon 3
GTTTTATAGGTGATGTACCAGTCATACTTGCAAAACCACAGACTTATATGAATTCAAGTGGTGAATCTgtaagtctgctatctg-gataatattcaaatgttatgtaagcaatagtattttattgtatctataatgactcatgtttattcttatgacatcaattctttt
|  |||| |||||||| ||||| || ||||| || ||||||||||| |||||| |||||||||| |||||||||     | ||   || |  |||| ||   |||||     ||    || |     ||| || ||| |  |||| | |  |                 
GCCTTATTGGTGATGTCCCAGTAATGCTTGCCAAGCCACAGACTTACATGAATGCAAGTGGTGAGTCTgtaagtacaaaacctataatcagtttcagat-caatgtacttgcta----ttcagccagtctttactgaatattgttgacttatgcag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192307381|gb|FK001969.1|FK001969
EST:     CAGTCATACTTGCAAAACCACAGACTTATATGAATTCAAGTGGTGAATCT                         GTTGGGGCCATAGTTTCATATTACAAGATTCCACTGAAGCAAGTACTTGTG
genomic: CAGTCATACTTGCAAAACCACAGACTTATATGAATTCAAGTGGTGAATCTgtaagtctgc ... tattttgaagGTTGGGGCCATAGTTTCATATTACAAGATTCCACTGAAGCAAGTACTTGTG
EST: gi|298185189|gb|HO030402.1|HO030402
EST:     CAGTCATACTTGCAAAACCACAGACTTATATGAATTCAAGTGGTGAATCT                         GTTGGGGCCATAGTTTCATATTACAAGATTCCACTGAAGCAAGTACTTGTG
genomic: CAGTCATACTTGCAAAACCACAGACTTATATGAATTCAAGTGGTGAATCTgtaagtctgc ... tattttgaagGTTGGGGCCATAGTTTCATATTACAAGATTCCACTGAAGCAAGTACTTGTG
EST: gi|151403649|gb|EV273459.1|EV273459
EST:     CAGTCATACTTGCAAAACCACAGACTTATATGAATTCAAGTGGTGAATCT                         GTTGGGGCCATAGTTTCATATTACAAGATTCCACTGAAGCAAGTACTTGAG
genomic: CAGTCATACTTGCAAAACCACAGACTTATATGAATTCAAGTGGTGAATCTgtaagtctgc ... tattttgaagGTTGGGGCCATAGTTTCATATTACAAGATTCCACTGAAGCAAGTACTTGTG