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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGATGGGACCTACTGAGGTTCCTTCTCAGTCCACGGAGACAATTAAGATTCCAACTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCTAGGgtaacttggacttcattcaaatggcctttcagtttgtgtttttttattgatgatgatgcttttctgcag

Basic information

species Glycine max
transcript GLYMA05G34360.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120533034|gb|EH261167.1|EH261167
EST:     CTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCTAGG                         TTGTTGCTCTGGGGGAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTC
genomic: CTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCTAGGgtaacttgga ... ttttctgcagTTGTTGCTCTGGGGCAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTC
EST: gi|193658120|gb|FK602007.1|FK602007
EST:     TTCCAACTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCTAGG                         TTGTTGCTCTGGGGCAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTC
genomic: TTCCAACTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCTAGGgtaacttgga ... ttttctgcagTTGTTGCTCTGGGGCAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTC
EST: gi|192296647|gb|FG991215.1|FG991215
EST:     TTCCAACTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCTAGG                         TTGTTGCTCTGGGGCAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTC
genomic: TTCCAACTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCTAGGgtaacttgga ... ttttctgcagTTGTTGCTCTGGGGCAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTC