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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATGATGAAGCTCTAGACCATGATCCTGCAGCAAAGTTGCCGGTCACACTGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTGgtgagtttctttgatttacctactgctacactccatagttttttttttattcttcttggaggatatatatacactgcatacttacaaacaataagtgcaa...

Basic information

species Glycine max
transcript GLYMA05G33770.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207756435|gb|GD729574.1|GD729574
EST:     TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTG                         GTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAAGCTTG
genomic: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTGgtgagtttct ... gttttattagGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAA-GCTTG
EST: gi|58021435|gb|CX708176.1|CX708176
EST:     TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTG                         GTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
genomic: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTGgtgagtttct ... gttttattagGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
EST: gi|7686403|gb|AW757051.1|AW757051
EST:     TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTG                         GTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
genomic: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTGgtgagtttct ... gttttattagGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
EST: gi|58015158|gb|CX701900.1|CX701900
EST:     TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTG                         GTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
genomic: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTGgtgagtttct ... gttttattagGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
EST: gi|208317341|gb|GE111936.1|GE111936
EST:     TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTG                         GTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
genomic: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTGgtgagtttct ... gttttattagGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
EST: gi|208128834|gb|GD930542.1|GD930542
EST:     TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTG                         GTACAGGTGATTGACTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
genomic: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTGgtgagtttct ... gttttattagGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
EST: gi|192312144|gb|FK003893.1|FK003893
EST:     TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTG                         GTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
genomic: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTGgtgagtttct ... gttttattagGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
EST: gi|192303882|gb|FG998234.1|FG998234
EST:     TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTG                         GTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
genomic: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTGgtgagtttct ... gttttattagGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
EST: gi|10232028|gb|BE800916.1|BE800916
EST:     TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTG                         GTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
genomic: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTGgtgagtttct ... gttttattagGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
EST: gi|7147263|gb|AW509185.1|AW509185
EST:     TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTG                         GTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
genomic: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTGgtgagtttct ... gttttattagGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
EST: gi|6746941|gb|AW317397.1|AW317397
EST:     TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTG                         GTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
genomic: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTGgtgagtttct ... gttttattagGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
EST: gi|192312143|gb|FK003892.1|FK003892
EST:     TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTG                         GTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
genomic: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTGgtgagtttct ... gttttattagGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTATGATGAAGCTCTAGACCATGATCCTGCAGCAAAGTTGCCGGTCACACTGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTGgtgagtttctttgatttacctactgctacactccatagttttttttttattcttcttggaggatatatatacactgcatacttacaaacaataagtgcaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG