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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCATGACTACAGGGGTGATGTTGAAGCTCAATTGAATCCAATCCTTCAGAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTGgtaaggtgacttctcggaatctcaatagaggttttatcctgaatagtaagttaagtagccttctaatcttaaaactccccag

Basic information

species Glycine max
transcript GLYMA05G33640.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151396212|gb|EV266089.1|EV266089
EST:     GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTG                         AAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
genomic: GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTGgtaaggtgac ... aactccccagAAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
EST: gi|18848901|gb|BM568011.1|BM568011
EST:     GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTG                         AAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
genomic: GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTGgtaaggtgac ... aactccccagAAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
EST: gi|151406975|gb|EV276790.1|EV276790
EST:     GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTG                         AAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
genomic: GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTGgtaaggtgac ... aactccccagAAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
EST: gi|120534060|gb|EH262193.1|EH262193
EST:     GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTG                         AAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
genomic: GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTGgtaaggtgac ... aactccccagAAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
EST: gi|298163376|gb|HO012109.1|HO012109
EST:     GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTG                         AAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
genomic: GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTGgtaaggtgac ... aactccccagAAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
EST: gi|10237583|gb|BE806471.1|BE806471
EST:     GAAAATTGATCCTAGATGGATCTGCCAAAGAGCATTTATTGTTGATACTG                         AAATGGCTGACGT-CTTCTTCATTGATTCAAC
genomic: GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTGgtaaggtgac ... aactccccagAAATTGCTGA-GTTCTTCTTCATTGATTCAAC
EST: gi|298197299|gb|HO044778.1|HO044778
EST:     GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTG                         AAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
genomic: GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTGgtaaggtgac ... aactccccagAAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
EST: gi|254314578|gb|GR829571.1|GR829571
EST:     GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTG                         AAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
genomic: GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTGgtaaggtgac ... aactccccagAAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
EST: gi|208098987|gb|GD893854.1|GD893854
EST:     GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTG                         AAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
genomic: GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTGgtaaggtgac ... aactccccagAAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
EST: gi|298189993|gb|HO032114.1|HO032114
EST:     GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTG                         AAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
genomic: GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTGgtaaggtgac ... aactccccagAAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
EST: gi|298178541|gb|HO024276.1|HO024276
EST:     GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTG                         AAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
genomic: GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTGgtaaggtgac ... aactccccagAAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
EST: gi|298171038|gb|HO016070.1|HO016070
EST:     GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTG                         AAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGAC
genomic: GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTGgtaaggtgac ... aactccccagAAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGAC
EST: gi|9987619|gb|BE661727.1|BE661727
EST:     GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTG                         AAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
genomic: GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTGgtaaggtgac ... aactccccagAAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
EST: gi|192299309|gb|FG990734.1|FG990734
EST:     GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTG                         AAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
genomic: GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTGgtaaggtgac ... aactccccagAAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
EST: gi|298170795|gb|HO015771.1|HO015771
EST:     GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTG                         AAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
genomic: GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTGgtaaggtgac ... aactccccagAAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
EST: gi|192328997|gb|FK019696.1|FK019696
EST:     GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTG                         AAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
genomic: GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTGgtaaggtgac ... aactccccagAAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
EST: gi|192301322|gb|FG990212.1|FG990212
EST:     GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTG                         AAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
genomic: GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTGgtaaggtgac ... aactccccagAAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
EST: gi|308098252|gb|HO759993.1|HO759993
EST:     GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTG                         AAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT
genomic: GAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTGgtaaggtgac ... aactccccagAAATTGCTGAGTTCTTCTTCATTGATTCAACACCTTTTGTGGACAAGTATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACCATGACTACAGGGGTGATGTTGAAGCTCAATTGAATCCAATCCTTCAGAAAATTGATCCTAGATGGATCTGCCAAAGATCATTTATTGTTGATACTGgtaaggtgacttctcggaatctcaatagaggttttatcctgaatagtaagttaagtagccttctaatcttaaaactccccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA