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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCGTAGAGGTGGTGTAGATGAGCCGTTTGCATGGGAAAGTAGAGAGTTTCTACGGAAGCTCTGCATTGGGAAGgtaggcaaaatgatattttttttttcccgttttagtagctcttactctggtagtctgcttgtgttttttttagataaatcattctaagtctctgacctggtatatgattggaacag

Basic information

species Glycine max
transcript GLYMA05G33320.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G33320.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G136296_T02 (Zea mays), 5'ss of exon 3
GCGCGTAGAGGTGGTGTAGATGAGCCGTTTGCATGGGAAAGTAGAGAGTTTCTACGGAAGCTCTGCATTGGGAAGgtaggcaaaatgatattttttttttcccgttttagtagctcttactctggtagtctgcttgtgttttttttagataaatcattctaagtctctgacctggtatatgattggaacag
|| ||| | ||||| || ||||||||||||||||||||||| |||||||||||  ||||||||||||| ||||||||     |  |||  ||  | | ||| |        |||||| |      |  |    || | ||||||||        || |  ||   | | | ||  | | | |  |      
GCTCGTCGTGGTGGAGTTGATGAGCCGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAGgtgctacatttgaacttcatatcttctccg------agctctcatatcattcattgtattcttttttttttga------cactgcaaaattataatctcctgt-taacag------

upper sequence: GLYMA05G33320.1 (Glycine max), 5'ss of exon 3
lower sequence: AC207890.3_FGT002 (Zea mays), 5'ss of exon 2
GCGCGTAGAGGTGGTGTAGATGAGCCGTTTGCATGGGAAAGTAGAGAGTTTCTACGGAAGCTCTGCATTGGGAAGgtaggcaaaatgatattttttttttcccgttttagtagctcttactctggtagtctgcttgtgttttttttagataaatcattctaagtctctgacctggtatatgattggaacag
|| ||  | ||||| || || ||||| |||||||||||||| |||||||||||| ||||||| || || ||||||||     |  |||  ||  | | ||| |    ||    ||| ||   |   | | |  |  |  ||||||| || ||  ||   | |   ||||  ||| || |            
GCTCGCCGTGGTGGAGTTGACGAGCCCTTTGCATGGGAAAGCAGAGAGTTTCTAAGGAAGCTTTGTATAGGGAAGgtgctacatttgaacttcatatcttctc----taaactctcgtatcatt-cattgtattcttcctttttttggacaatgcaaaattataatctg--ctgttacag-----------

upper sequence: GLYMA05G33320.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G61780.1 (Arabidopsis thaliana), 5'ss of exon 3
GCGCGTAGAGGTGGTGTAGATGAGCCGTTTGCATGGGAAAGTAGAGAGTTTCTACGGAAGCTCTGCATTGGGAAGgtaggcaaaatgatatttttttt-ttcccgttttagtagctcttactctggtagtctgcttgtgttttttttagataaatcattctaagtctctgacctggtatatgattggaacag
|| || ||||| ||| |||||||||| |||||||||||||| || ||||||||| ||||||| |||||||| |||||        | |  | ||| |   |   || |||  || | |     ||  |   |   |   | ||       |||| | || |   |   ||| | |                 
GCTCGCAGAGGAGGTATAGATGAGCCTTTTGCATGGGAAAGCAGGGAGTTTCTAAGGAAGCTTTGCATTGGAAAGgtgctttgtttaaactctttatcacttatgtgttataagttatggaattgaaaagttttcttcatattaacagtttaaaccttttttttttcttgagcag-----------------

upper sequence: GLYMA05G33320.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 3
GCGCGTAGAGGTGGTGTAGATGAGCCGTTTGCATGGGAAAGTAGAGAGTTTCTACGGAAGCTCTGCATTGGGAAGgtaggcaaaatgatattttttttttcccgttttagtagctcttactctggtagtctgcttgtgttttttttagataaatcattctaagtctctgacctggtatatgattggaacag
|| ||||| ||||| || |||||||||||||||||||| || ||||||| | || |||||||||||||||| |||||   || | | |   | |||   |    |||   ||  |   | |||  |      |   ||||   |     | | ||| | ||| ||| | |   |                 
GCCCGTAGGGGTGGAGTTGATGAGCCGTTTGCATGGGACAGCAGAGAGTATTTAAGGAAGCTCTGCATTGGAAAGgtgcccatagttaacatgtttcggttttttttggctatataacattctcttttaagacagatgttgcatc----ttactcaatataattctttaaatag-----------------

upper sequence: GLYMA05G33320.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0068g00720.t01 (Vitis vinifera), 5'ss of exon 2
GCGCGTAGAGGTGGTGTAGATGAGCCGTTTGCATGGGAAAGTAGAGAGTTTCTACGGAAGCTCTGCATTGGGAAGgtaggcaaaatgatattttttttttcccgttttagtagctcttactctggtagtctgcttgtgttttttttagataaatcattctaagtctctgacctggtatatgattggaacag
|| |||||||||||| | ||||| || ||||||||||| |||||||||| | |  |||| |||||||| || |||||       ||   | |||| ||  ||  || | ||       |  ||  || ||| ||| ||     |  |      || | || ||    ||   | |||| |||||  || ||
GCCCGTAGAGGTGGTATTGATGAACCATTTGCATGGGATAGTAGAGAGTATTTGAGGAAACTCTGCATAGGAAAGgtgcctctcatacaacttttctt--ccttttatggtg------atcctaatattct-cttttgaaccatg-aatcctgtcttactcagatgttg---ttgtat-tgattacaatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213598156|gb|DB964159.1|DB964159
EST:     CGTTTGCATGGGAAAGTAGAGAGTTTCTACGGAAGCTCTGTATTGGGAAG                         GAGGTGGCCTTCAGAGTTGATTACACCGTGCCATCGATAAATCGTGACTTT
genomic: CGTTTGCATGGGAAAGTAGAGAGTTTCTACGGAAGCTCTGCATTGGGAAGgtaggcaaaa ... attggaacagGAGGTGGCCTTCAGAGTTGATTACACCGTGCCATCGATAAATCGTGACTTT
EST: gi|209711431|gb|BW665183.1|BW665183
EST:     CGTTTGCATGGGAAAGTAGAGAGTTTCTACGGAAGCTCTGTATTGGGAAG                         GAGGTGGCCTTCAGAGTTGATTACACCGTGCCATCGATAAATCGTGACTTT
genomic: CGTTTGCATGGGAAAGTAGAGAGTTTCTACGGAAGCTCTGCATTGGGAAGgtaggcaaaa ... attggaacagGAGGTGGCCTTCAGAGTTGATTACACCGTGCCATCGATAAATCGTGACTTT