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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGGCAGCTCTGGTCAATGCTGCAACAAGTGAGAAACTGGCTGAAACTGACTGGATGAAAAATATTGAAATCTGTGAATTAGTTGCTCATGATCAAAGgtacccgacaaagctttattttccttatatgatattcaaggttttttaaaaaaagtccttgactgtaattgcaactgcaacatcaaggtttttggagttt...

Basic information

species Glycine max
transcript GLYMA05G33150.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G33150.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0031g03190.t01 (Vitis vinifera), 5'ss of exon 1
AGATGGCAGCTCTGGTCAATGCTGCAACAAGTGAGAAACTGGCTGAAACTGACTGGATGAAAAATATTGAAATCTGTGAATTAGTTGCTCATGATCAAAGgtacccgacaaagctttattttccttatatgatattcaaggttttttaaaaaaagtccttgactgtaattgcaactgcaacatcaaggtttttggagttt-
 |   |  |  || || ||| | |||||||||||||| ||  ||||||  || ||||  ||||| |||||||| |||||||||||||  | ||||||||||||      ||  |  |   ||| ||   |  | || ||   |  |||  ||   |   | | ||||  |   | ||| | | | |  |  ||| |  || 
TGGCAGGGGAGCTTGTTAATTCGGCAACAAGTGAGAAGCTAACTGAAATGGATTGGACAAAAAACATTGAAATTTGTGAATTAGTTGGACGTGATCAAAGgtatt-attaactcactgaattctttcagttgttttaaaatatgattatgaagtatgtattattgtaggtttgattgctaaacccaattacttgcaagttg