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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgtaatataaattgtactcactcaattcatctaagtttttagcctttcgggaaaacaaattttagcctttcatattttcattctgacccatcttttattgtaaattttag

Basic information

species Glycine max
transcript GLYMA05G33040.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G33040.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g35530.1 (Oryza sativa), 5'ss of exon 4
GGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgtaatataaattgtactcactcaattcatctaagtttttagcctttcgggaaaacaaattttagcctttcatattt-tcattctgacccatcttttattgtaaattttag
||| |||||  || |||||||  | || ||  |||| |||||||||||||  ||| ||||||| ||||||| ||||||||| |||||||| ||||    |    | |   |  |  ||| |   ||| |||     |||   |  |  || || |    |||  ||||  | || ||                          
GGAAGAGTTAGAAATCTTTTCAAAAGAAGTTGTTCGATTTGGAAATCGTTGCAAGAATCCTCAATGGCACAGCTTGGACCGCTACTTTGAAAAgtgcagtttgatttctgccttgtatttaatgaaggttta----ttttaaggcactaatttat---tttttgtattgattatactag------------------------

upper sequence: GLYMA05G33040.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g65330.2 (Oryza sativa), 5'ss of exon 3
GGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgtaatataaattgtactcactcaattcatctaagtttttagcctttcgggaaaacaaattttagcctttcatattttcattctgacccatcttttattgtaaattttag
||| ||||||||||| ||||||   || ||  |||| |||||||| || |  ||||||||||||||||| |||||||| || |||||||| ||||   ||   || | | | |  |  |  | |||     |    | | ||||  |  || || ||   ||       |||   |    ||                    
GGAAGAGTTGAAAGTGTTTTCTACAGAAGTTGTTCGCTTTGGAAACCGCTGCAAGGATCCTCAGTGGCATAACTTGGATCGCTACTTTGACAAgtttgattcgtttttcacccctatgttttataaagcaatga--tatagggagtattaagtt-agtgctttgctgcatcaaaatatttcag-------------------

upper sequence: GLYMA05G33040.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G046846_T01 (Zea mays), 5'ss of exon 4
GGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgtaatataaattgtactcactcaattcatctaagtttttagcctttcgggaaaacaaattttagcctttcatattttcattctgacccatcttttattgtaaattttag
||| ||||||||||| || |||   || ||  |||| |||||||||||||  ||||||||||||||||||||||||||||| |||||||| |||||| ||  | | |   | ||     | | ||       ||  ||| ||| |   ||| || |    |      ||| || |  | | | || ||   |          
GGAAGAGTTGAAAGTGTTCTCTACAGAAGTTGTTCGCTTTGGAAATCGTTGCAAGGATCCTCAGTGGCACAACTTGGACCGCTACTTTGATAAgtaaaattcactttgagcccttgcaacctatagagacaaagattttagggtattaaaaattaa---ctcagcgcttttatgcc-atcaaactctttcag----------

upper sequence: GLYMA05G33040.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G320615_T01 (Zea mays), 5'ss of exon 3
GGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgtaatataaattgtactcactcaattcatctaagtttttagcctttcgggaaaacaaattttagcctttcatattttcattctgacccatcttttattgtaaattttag
|||  ||||  |||| ||| |  | ||||| ||||| |||||||||||||  ||||||||||||||||| ||||||||| | |||||||| |||||   ||  ||    |  |||| |  | || ||||| | | | |            | ||||| ||   | |||||  |||||     | ||  |||           
GGAAAAGTTAGAAGTATTTACAAAAGAGGTCATTCGCTTTGGAAATCGTTGCAAGGATCCTCAGTGGCATAACTTGGACTGCTACTTTGAAAAgta---tagttt---ttttctcagt--acctgagtttgtggacgt--------gtttactttaggctactaaattttt-ttctg-tttgtattccattag---------

upper sequence: GLYMA05G33040.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G077621_T01 (Zea mays), 5'ss of exon 3
GGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgtaatataaattgt-actcactcaattcatctaagtttttagcctttcgggaaaacaaattttagcctttcatattttcattctgacccatcttttattgtaaattttag
||| |||||  |||| ||  |  | ||||| ||||| |||||||| ||||  ||||||||||||||||| ||||||||||| |||||||| |||||   |   || | | |  || | ||  | || |  ||||  |||| ||  |  | || ||||    |   | | |||  |  |                         
GGAAGAGTTAGAAGTATTCACAAAAGAGGTCATTCGCTTTGGAAACCGTTGCAAGGATCCTCAGTGGCATAACTTGGACCGCTACTTTGAAAAgtatagttttttctcagtacctgagtttgtgtacgcgttta--ctttaggcta--ctaactttatttctgtttgtattccattag-------------------------

upper sequence: GLYMA05G33040.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G148773_T03 (Zea mays), 5'ss of exon 3
GGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgtaatataaattgtactcactcaattcatctaagtttttagcctttcgggaaaacaaattttagcctttcatattttcattctgacccatcttttattgtaaattttag
||| ||||||||||| ||||||   || ||  |||| ||||||||| |||  |||||||||||||||||||| ||| |||| |||||||| ||||||  |  | | |   | |      | | ||       ||  ||| ||| |   ||| || |  ||       ||| || |  | | | || ||   |          
GGAAGAGTTGAAAGTGTTTTCTACAGAAGTTGTTCGCTTTGGAAATTGTTGCAAGGATCCTCAGTGGCACAATTTGAACCGCTACTTTGATAAgtaaagttcactttggacccctgcagcctatagaggcaaaggttttagggtattgaaaattaa--ctcaggcgcttttatgcc-atcaaactctttcag----------

upper sequence: GLYMA05G33040.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G097502_T02 (Zea mays), 5'ss of exon 3
GGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgtaatataaattgtactcactcaattcatctaagtttttagcctttcgggaaaacaaattttagcctttcatattttcattctgacccatcttttattgtaaattttag
||| |||||  |||| ||  |    |||||  |||| |||||||| ||||  ||||||||||| ||||| ||||||||||| |||||||| |||||    |  ||            ||| ||| |||  ||    ||  |         | |||||  |   | | ||||||| |   |    ||  |||           
GGAAGAGTTAGAAGTATTCACAAGAGAGGTTGTTCGCTTTGGAAACCGTTGCAAGGATCCTCAATGGCATAACTTGGACCGCTACTTTGAAAAgta---cagttt------------ttcttctcagtacttgaatttgagaatgtgtttactttaggttacta-actttcatttttgtctggattccattag---------

upper sequence: GLYMA05G33040.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 3
GGATGAGTTGAAAGTCTTTTCTGATGAGGTAATTCGTTTTGGAAATCGTTCAAAGGATCCTCAGTGGCACAACTTGGACCGATACTTTGAGAAgtaatataaattgtactcactcaattcatctaagtttttagcctttcgggaaaacaaattttagcctttcatattttcattctgacccatcttttattgtaaattttag
||| ||||||||| | |||   |  || ||  ||||||||||||||| ||  |  |||||||||||||||||||||||||  || ||||||||||||| |   || ||| || | | ||  | |   | || ||  |     ||   |  ||||  |  | | || |||  | | |    | |  || |||  |  ||  ||
GGAAGAGTTGAAAATTTTTGTGGGAGAAGTGGTTCGTTTTGGAAATCATTGTAGAGATCCTCAGTGGCACAACTTGGACCTTTATTTTGAGAAgtaatgt---ttatac-catttacttgctttggttattgagttt----agatgtcggattt--gtttattatgtttctaatatagtgcctactt-atttcattttccag