1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AATAGATCACAAGAGACCCAGCCATATTTAAATGGACGCTGTATTTATCTTGTTGgtcagtttcttggttgacttcttgtgcttacatggtatgctttggaaattactttggcattaaaaatgctttgaatttgacgtgcag
species | Glycine max |
transcript | GLYMA05G31730.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATCACAAGAGACCCAGCCATATTTAAATGGACGCTGTATTTATCTTGGTG GAATGATGGGCTCTGGGAAAACAEST: gi|192322857|gb|FK014788.1|FK014788
genomic: ATCACAAGAGACCCAGCCATATTTAAATGGACGCTGTATTTATCTTGTTGgtcagtttct ... tgacgtgcagGAATGATGGGCTCTGGGAAAACA
EST: ATCACAAGAGACCCAGCCATATTTAAATGGACGCTGTATTTATCTTGTTG GAATGATGGGCTCTGGGAAAACAACAGTGGGGAAGATAATGTCGCAAGTGCEST: gi|27425845|gb|CA937365.1|CA937365
genomic: ATCACAAGAGACCCAGCCATATTTAAATGGACGCTGTATTTATCTTGTTGgtcagtttct ... tgacgtgcagGAATGATGGGCTCTGGGAAAACAACAGTGGGGAAGATAATGTCGCAAGTGC
EST: ATCACAAGAGACCCAGCCATATTTAAATGGACGCTGTATTTATCTTGTTG GAATGATGGGCTCTGGGGAAACAACAGTGGGGEST: gi|254327598|gb|GR837207.1|GR837207
genomic: ATCACAAGAGACCCAGCCATATTTAAATGGACGCTGTATTTATCTTGTTGgtcagtttct ... tgacgtgcagGAATGATGGGCTCTGGGAAAACAACAGTGGGG
EST: ATCACAAGAGACCCAGCCATATTTAAATGGACGCTGTATTTATCTTGTTG GAATGATGGGCTCTGGGAAAACAACAGTGGGGAAGATAATGTCGCAAGTGC
genomic: ATCACAAGAGACCCAGCCATATTTAAATGGACGCTGTATTTATCTTGTTGgtcagtttct ... tgacgtgcagGAATGATGGGCTCTGGGAAAACAACAGTGGGGAAGATAATGTCGCAAGTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATAGATCACAAGAGACCCAGCCATATTTAAATGGACGCTGTATTTATCTTGTTGgtcagtttcttggttgacttcttgtgcttacatggtatgctttggaaattactttggcattaaaaatgctttgaatttgacgtgcag
- - - - - AAGAGA