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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCAATTACTTTGGGTCGCTGACCCAGGCATCAGCTATTAGAGTTGGGTCTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactaccatctcttggggaatgaatatagtctgtctttttgttttatctttttctgtacttttaattcaataattctaattcaaaaaatgataatta...

Basic information

species Glycine max
transcript GLYMA05G31450.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G31450.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 3
AGCCAATTACTTTGGGTCGCTGACCCAGGCATCAGCTATTAGAGTTGGGTCTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactaccatctcttggggaatgaatatagtc-tgtctttttgttttatctttttctgtacttttaattcaataattctaattcaaaaaatgataatta-
||||||||||||||| |||||||| ||||||||  | ||  |||||||||| | | | || ||||  || || || |||||||||||||| || || ||||||   ||  | |||      | |||| ||| |    | | |       ||  |||  | || || || |   |||    ||||| | |  || || || | 
AGCCAATTACTTTGGCTCGCTGACTCAGGCATCGACCATCCGAGTTGGGTCCTACAATGGAGAGGAGATTTACGCTCCATTCAAGAGCCTCCTCCCTATGgtaagttagtaactcaatttcattgaaaatatttgcatgtgtggaaagcattatttgatttatttatagtatgata----taatttatattataatgatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120533337|gb|EH261470.1|EH261470
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|19346456|gb|BM891336.1|BM891336
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|207845053|gb|GD817534.1|GD817534
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATA
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATA
EST: gi|208159306|gb|GD954257.1|GD954257
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAA
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAA
EST: gi|193728938|gb|FK665620.1|FK665620
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|193514317|gb|FK470633.1|FK470633
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGA
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGA
EST: gi|15285158|gb|BI469049.1|BI469049
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|20813012|gb|BQ297490.1|BQ297490
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|193355266|gb|FK320887.1|FK320887
EST:     AGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAATAACTTGAAC
genomic: AGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|213588844|gb|DB967938.1|DB967938
EST:     CTTTCCAAGGNGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|17021895|gb|BM092929.1|BM092929
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|20814880|gb|BQ299358.1|BQ299358
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|193718097|gb|FK653829.1|FK653829
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|193334748|gb|FK300568.1|FK300568
EST:     ATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GCAAGCCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: ATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|208327147|gb|GE122369.1|GE122369
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCCGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|207844116|gb|GD815211.1|GD815211
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGT
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGT
EST: gi|120533531|gb|EH261664.1|EH261664
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|120529472|gb|EH257606.1|EH257606
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTCTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|15338188|gb|BI498852.1|BI498852
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|208161439|gb|GD963893.1|GD963893
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGT
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGT
EST: gi|22540793|gb|BU090627.1|BU090627
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGCGTTTGGGGGATGGCATATCAGT
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGT
EST: gi|20813560|gb|BQ298038.1|BQ298038
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|120495837|gb|EH224004.1|EH224004
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTATGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|9986211|gb|BE660319.1|BE660319
EST:     AGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: AGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|9258023|gb|BE346146.1|BE346146
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|208093937|gb|GD896154.1|GD896154
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGG
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGG
EST: gi|208192854|gb|GD989247.1|GD989247
EST:     TTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAACG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGA
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGA
EST: gi|10237426|gb|BE806314.1|BE806314
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTT-GGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|14259658|gb|BG882566.1|BG882566
EST:     CAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|208084212|gb|GD880466.1|GD880466
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGA
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGA