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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGCAAACGCAGGTGATGGGTGTAATGAAACAAGAGCAGCCTGAAAGATATTTGCGTCTTGATCATCTCCTAGTTAGAACTTATTTTGATCCAAATGAGgttagaaatacattctgtaattcttttttttttttcgatttcatgttgtgattgttgtctaaattaagcaacttgtcgcttttttcccttttttctattt...

Basic information

species Glycine max
transcript GLYMA05G30430.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30430.2 (Glycine max), 5'ss of exon 3
lower sequence: AT1G73720.1 (Arabidopsis thaliana), 5'ss of exon 3
AAGGCAAACGCAGGTGATGGGTGTAATGAAACAAGAGCAGCCTGAAAGATATTTGCGTCTTGATCATCTCCTAGTTAGAACTTATTTTGATCCAAATGAGgttagaaatacattctgtaattcttttttttttttcg-atttcatgttgtgattgttgt--ctaaattaagcaacttgtcgcttttttcccttttttctattt
 || ||||| |||||||||||||| ||||| || |||||  | ||||||||||||||  | || ||||| ||||| ||||  |||||||||||  |||||||  | ||   ||  | |  |    | ||   | ||   ||   |||||   |||||||  ||   | |   ||      | || |   |   | ||| |   
GAGACAAACTCAGGTGATGGGTGTCATGAAGCAGGAGCAAGCAGAAAGATATTTGCGGATGGAGCATCTTCTAGTCAGAAGCTATTTTGATCCGCATGAGgtatggaaactatattatgctcgactattcaatatcacgttgggtgttgcttttgttgttgctgtgtcacctaagc--atggttgtccgcaactgttcaaca-

upper sequence: GLYMA05G30430.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv17s0000g08930.t01 (Vitis vinifera), 5'ss of exon 3
AAGGCAAACGCAGGTGATGGGTGTAATGAAACAAGAGCAGCCTGAAAGATATTTGCGTCTTGATCATCTCCTAGTTAGAACTTATTTTGATCCAAATGAGgttagaa--------------atacattctgtaattcttttttttttttcgatttcatgttgtgattgttgtctaaattaagcaacttgtcgcttttttcccttttttctattt
||| ||||| ||||  |||||||| |||||||||||||||||||||||||| ||||||||||| ||||| || ||| ||||||||||||||||| ||||||||||||              ||||||| | | ||||||      |  ||  || ||| ||   |||||| |  |   ||||  | ||   |  |         |         
AAGACAAACTCAGGCAATGGGTGTCATGAAACAAGAGCAGCCTGAAAGATACTTGCGTCTTGAGCATCTTCTTGTTCGAACTTATTTTGATCCACATGAGgttagaatgatggttttaatcatacattgtatcattcttcacacctactc--ttccattttaccattgtttttca---taagtgagtttctgaatacagtgggat---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209727601|gb|BW669925.1|BW669925
EST:     ATTTGCGTCTTGATCATCTCCTAGTTAGAACTTATATTGATCCAAATGAG                         GCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG
genomic: ATTTGCGTCTTGATCATCTCCTAGTTAGAACTTATTTTGATCCAAATGAGgttagaaata ... aatgtgacagGCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG
EST: gi|151408433|gb|EV278241.1|EV278241
EST:     TTGCGTCTTTGATCATCTCCTAGTTAGAACTTATTTTTGATCCAAATGAG                         GCTTATCAAGACTCAACAAAAGAGAAAGCGACGTGCACAAATAGCCCAAG
genomic: TTGCGTC-TTGATCATCTCCTAGTTAGAACTTA-TTTTGATCCAAATGAGgttagaaata ... aatgtgacagGCTTATCAAGACTCAACAAAAGAG-AAGCGACGTGCACAAATAGCCCAAG
EST: gi|208188792|gb|GD981376.1|GD981376
EST:     ATTTGCGTCATGATCATCTCCTAGTTAGAACTTATTTTGATCCAAATGAG                         GCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG
genomic: ATTTGCGTCTTGATCATCTCCTAGTTAGAACTTATTTTGATCCAAATGAGgttagaaata ... aatgtgacagGCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG
EST: gi|192300630|gb|FG989632.1|FG989632
EST:     ATTTGCGTCTTGATCATCTCCTAGTTAGAACTTATTTTGATCCAAATGAG                         GCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG
genomic: ATTTGCGTCTTGATCATCTCCTAGTTAGAACTTATTTTGATCCAAATGAGgttagaaata ... aatgtgacagGCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG
EST: gi|213609045|gb|DB958814.1|DB958814
EST:     ATTTGCGTCTTGATCATCTCCTAGTTAGAACTTATTTTGATCCAAATGAG                         GCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG
genomic: ATTTGCGTCTTGATCATCTCCTAGTTAGAACTTATTTTGATCCAAATGAGgttagaaata ... aatgtgacagGCTTATCAAGACTCAACAAAAGAGAAGCGACGTGCACAAATAGCCCAAG