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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTCCAGAAAGAAATTGTTAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaattagcttttgtttcttttttcctgcaaattcagtttaccttgacaagtcttgatagcatgtgtccaggaatgagaagcacctgcaagttttgtttattgacttatgatttgattaaatcctcataaacaatacccatggtagacag

Basic information

species Glycine max
transcript GLYMA05G29700.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G29700.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv10s0003g02590.t01 (Vitis vinifera), 5'ss of exon 3
GACTTCCAGAAAGAAATTGTTAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaat-tagcttttgtttcttt----------tttcctgcaaattcagtttacct---tgacaagtcttgatagcatgtgtccaggaatgag----aagcacctg--caagttttgtttattgacttatgatttgattaaatcctcataaacaatacccatggtagacag
|| || |||||||| ||||||| |||||  ||| |||| ||||| ||||| ||||| || || ||||||||||||||  ||  |  |  ||  |           |||| ||  ||   | ||  | |   |   | | ||    |    |     |  |||  |    ||  |  ||  | |||||    || | |||||  |||||  |  || ||     |||||    |||||   |||
GATTTTCAGAAAGATATTGTTAGAGCAGGGGAAGCATTCACAGCCATAGGATATAAACAAATCGAAACAGgtgaaaaagtaattcatactttctccaaatatgtatttcatggcaacatacttctcataatttggaggactgtgcaattagctcttaaaaatctgttccaaataaatgatctagtttacaatagtaacttaccatttgcgtttattctt---tacaatctgtatggttatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193730742|gb|FK663112.1|FK663112
EST:     TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|193513257|gb|FK470021.1|FK470021
EST:     AAGCTAGTCAAAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: AAGC-AG-CAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|193396156|gb|FK361911.1|FK361911
EST:     TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|151393188|gb|EV263063.1|EV263063
EST:     TAAAGTAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|209698264|gb|BW667553.1|BW667553
EST:     TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|151413137|gb|EV282945.1|EV282945
EST:     TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|193705968|gb|FK648392.1|FK648392
EST:     TAAAGCAGCAAAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|208122422|gb|GD920887.1|GD920887
EST:     TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|208048537|gb|GD847496.1|GD847496
EST:     AAAGCTAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: AAAGC-AGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|208306413|gb|GE109994.1|GE109994
EST:     TAAAGCAGCAGAAACATGTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|193686261|gb|FK625948.1|FK625948
EST:     TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|193515808|gb|FK475148.1|FK475148
EST:     TAAAGCAGCAAAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|193700820|gb|FK636807.1|FK636807
EST:     TAAAGCAGCAAAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|193721240|gb|FK659922.1|FK659922
EST:     TAAAGTAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|208203101|gb|GD997533.1|GD997533
EST:     TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAAATAATAGGAGCAGAGAACAACA
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGT-AAAT-AT-GGAGCAGAGAACAACA
EST: gi|208274115|gb|GE071065.1|GE071065
EST:     TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|208181147|gb|GD980186.1|GD980186
EST:     TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG