Sequence
atgc intronic sequence ATGC exonic sequenceGGGAACTTCTGATATTGTCCTGGTAGCTGGAGCCACTGGTGGCGTTGGTCGAAGGGTGGTTGACATATTACGGAAGAAAGGAATTCCAGTCCGAGTATTGgtattgttgttaacttaccttgctgacaagagaaaaatatagaaaaaaaaagcttagaaattttcgttctgttaattatttaattcagcgcataacaaacattacatttctgtatcaaattttatcag
Basic information
species | Glycine max |
transcript | GLYMA05G29330.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G29330.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g13970.2 (Oryza sativa), 5'ss of exon 3
GGGAACTTCTGATATTGTCCTGGTAGCTGGAGCCACTGGTGGCGTTGGTCGAAGGGTGGTTGACATATTACGGAAGAAAGGAATTCCAGTCCGAGTATTGgta------ttgtt--gttaacttacctt--gctgacaagagaaaaat-atagaaaaaaaaagcttagaaattttcgttctgttaattatttaattcagcgcataaca--aacattacatttctgtatcaaattttatcag
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GGAATCTTCTGATGTGGTGCTGGTCACTGGAGCTACCGGTGGCGTTGGACGAAGAGTGGTTGATATCCTGCGGAATAAGGGAATACCCGTTCGAGTATTGgtacaatacttgtcaagcttatctacttttggcttctctgttttcattcattattacatggatagtccaacttctccctcttttgttggatctttgctgctcttaatgttgatctaacatttcaaatttcaattcag----
upper sequence: GLYMA05G29330.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv10s0003g01640.t01 (Vitis vinifera), 5'ss of exon 3
GGGAACTTCTGATATTGTCCTGGTAGCTGGAGCCACTGGTGGCGTTGGTCGAAGGGTGGTTGACATATTACGGAAGAAAGGAATTCCAGTCCGAGTATTGgtattgttgttaacttaccttgctgacaagagaaaaatatagaaaaaaaaagcttagaaattttcgttctgttaattatttaattcagcgcataacaaacattacatttctgtatcaaattttatcag
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GGAAACTTCTGGTATCGTCTTGGTAGCAGGAGCCACTGGAGGCGTAGGCAGAAGGGTAGTTGACATTTTACGCAAAAAGGGACTGCCAGTTCGAGTATTGgtattctgcttccctt--cttgatgttaatgattccattttcaattgtaatg---atagctccaattttctccaatggccacattctattctagatatgtaaccc-----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|11412079|gb|BF424090.1|BF424090EST: GAAGG-TGGTTGACATATTACGGAAGAAAGGAATTCCAGTCCGAGTATTG GTTAGAAATGAAGA
genomic: -AAGGGTGGTTGACATATTACGGAAGAAAGGAATTCCAGTCCGAGTATTGgtattgttgt ... attttatcagGTTAGAAATGAAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGAACTTCTGATATTGTCCTGGTAGCTGGAGCCACTGGTGGCGTTGGTCGAAGGGTGGTTGACATATTACGGAAGAAAGGAATTCCAGTCCGAGTATTGgtattgttgttaacttaccttgctgacaagagaaaaatatagaaaaaaaaagcttagaaattttcgttctgttaattatttaattcagcgcataacaaacattacatttctgtatcaaattttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA