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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgtatttggacctcttgcatctgttgtggttttaatttaaacctggtgattctgattcatggtatctgttgtggagtgtggactatatggttg...

Basic information

species Glycine max
transcript GLYMA05G29080.7
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G29080.7 (Glycine max), 5'ss of exon 3
lower sequence: PP1S201_25V6.1 (Physcomitrella patens), 5'ss of exon 3
GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgtatttggacctcttgcatctgttgtg-gttttaatttaaacctgg-----tgattctg--attcatggt---atctgttgtggagtgtggactatatggttg---------------------------------------------------------------------------------
|||||| ||||| ||||||||||| || ||||||||  | || | |||||||||||| |||||||| || ||  |||| || || ||||| ||  |   |  ||     | |    |||  || ||  ||   | | | |||     ||   |||    |  ||||   | |||||||  ||| |    ||| |||  |                                                                                 
GAAGGGAGACTACTACCGGTACCTGGCGGAGTTCAAAACTGGGGCTGAGAGAAAAGAAGCTGCTGACCAATCTTTGAAGGCCTACCAGgtgtgtctacgtgggggtgattgggtgttgtgctgagtaatatagtgagcttgggtggttggcactgcagcttgtggtgataactgttgtctagtttctg-tatctggcggtggtggcgcagtgttgtccaattaagtgggctgcgtggcatgagtagtaacgtgacggaggtgatgtgaatacgtgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208266480|gb|GE063219.1|GE063219
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|254327926|gb|GR834891.1|GR834891
EST:     ATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: ATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|207702007|gb|GD683881.1|GD683881
EST:     GAGGCTGCTGATCATTCCATGAAAGCGTATCAGG                         T
genomic: GAGGCTGCTGATCATTCCATGAAAGCGTATCA-Ggtctgcttgt ... aatattgcag-
EST: gi|207702007|gb|GD683881.1|GD683881
EST:     GAGGCTGCTGATCATTCCATGAAAGCGTATCAGG                         T
genomic: GAGGCTGCTGATCATTCCATGAAAGCGTATCA-Ggtctgcttgt ... aatattgcag-
EST: gi|207702007|gb|GD683881.1|GD683881
EST:     GAGGCTGCTGATCATTCCATGAAAGCGTATCAGG                         T
genomic: GAGGCTGCTGATCATTCCATGAAAGCGTATCA-Ggtctgcttgt ... aatattgcag-
EST: gi|207702007|gb|GD683881.1|GD683881
EST:     GAGGCTGCTGATCATTCCATGAAAGCGTATCAGG                         T
genomic: GAGGCTGCTGATCATTCCATGAAAGCGTATCA-Ggtctgcttgt ... aatattgcag-
EST: gi|4301911|gb|AI443258.1|AI443258
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|254328642|gb|GR833014.1|GR833014
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|207770217|gb|GD742307.1|GD742307
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|254333165|gb|GR850415.1|GR850415
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|10709621|gb|BF009345.1|BF009345
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|254328641|gb|GR833013.1|GR833013
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|298178990|gb|HO024725.1|HO024725
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGA
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGA
EST: gi|5058166|gb|AI736642.1|AI736642
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|193540325|gb|FK494815.1|FK494815
EST:     CCGGTGATGAGAG-AAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|13477504|gb|BG507360.1|BG507360
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|17519552|gb|BM188594.1|BM188594
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|193724885|gb|FK659233.1|FK659233
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|17518586|gb|BM187628.1|BM187628
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|10846261|gb|BF069189.1|BF069189
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|14011311|gb|BG726242.1|BG726242
EST:     CGGTGATGATGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CGGTGATGA-GAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|17022285|gb|BM093319.1|BM093319
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|192309538|gb|FK000970.1|FK000970
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|5666653|gb|AI930689.1|AI930689
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|21889084|gb|BQ742297.1|BQ742297
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|254335227|gb|GR846724.1|GR846724
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|254333164|gb|GR850414.1|GR850414
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|208154066|gb|GD951871.1|GD951871
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGG
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGG
EST: gi|298191378|gb|HO038857.1|HO038857
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|193705946|gb|FK647152.1|FK647152
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCC
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCC
EST: gi|208286315|gb|GE087787.1|GE087787
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|254347253|gb|GR853502.1|GR853502
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|21638441|gb|BM139487.1|BM139487
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|193708168|gb|FK648130.1|FK648130
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|19270324|gb|BM886580.1|BM886580
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATC
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATC
EST: gi|254336492|gb|GR842671.1|GR842671
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|151394632|gb|EV264503.1|EV264503
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|10843848|gb|BF067096.1|BF067096
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         GTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATGCCATACGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|7233997|gb|AW569338.1|AW569338
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|192309537|gb|FK000969.1|FK000969
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|7795822|gb|AW781219.1|AW781219
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|254335228|gb|GR846725.1|GR846725
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCA-TCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|207705808|gb|GD686884.1|GD686884
EST:     GAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: GAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|193572269|gb|FK530014.1|FK530014
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATTCC
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGC-TTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCAT-CC
EST: gi|10231553|gb|BE800441.1|BE800441
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGATAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGG
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|6482683|gb|AW201922.1|AW201922
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGANGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|254336493|gb|GR842672.1|GR842672
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCTGAGTTAGCATCCACACATCCCATCCGT
EST: gi|193537717|gb|FK497650.1|FK497650
EST:     CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG                         TTGGCTTCCACTACTGCCGAGGCTAGAGTTAGCATCCACACATCCCATCCG
genomic: CCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgt ... aatattgcagTTGGCTTCCACTACTGCCGAGGCT-GAGTTAGCATCCACACATCCCATCCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGgtctgcttgtatttggacctcttgcatctgttgtggttttaatttaaacctggtgattctgattcatggtatctgttgtggagtgtggactatatggttg

- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT