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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCGGGTGTGGATAAGTTGGAGGAAGGTGAAGAGCTTCAGTGTGATCCTTCTGCTTACAATTCTCTTCATGCCTTTCACATTGGATGGCCATGTTTGAGgtattttcattcatggcctttttttgttcttgtcatttgttttctgtttttctatttggctccacagaaagaggaaagagaacaaaactttgagcttttt...

Basic information

species Glycine max
transcript GLYMA05G28040.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G28040.2 (Glycine max), 5'ss of exon 3
lower sequence: AT2G19540.1 (Arabidopsis thaliana), 5'ss of exon 2
AACCGGGTGTGGATAAGTTGGAGGAAGGTGAAGAGCTTCAGTGTGATCCTTCTGCTTACAATTCTCTTCATGCCTTTCACATTGGATGGCCATGTTTGAGgtattttcattcatggcctttttttgttcttgtcatttgttttctgtttttctatttggctccacagaaagaggaaa-gagaacaaaactttgagcttttt------
|||| ||||| ||||   | || || || ||||| ||||||||||| ||||||||||| |||||||| |||| ||| ||  |||| ||||| ||| ||||||| | |||||      ||  |  | | | |||  |       |||        |  | ||  |  || |    ||| |||||      | |  | || |       
AACCAGGTGTTGATACCCTTGAAGATGGAGAAGAACTTCAGTGTGACCCTTCTGCTTATAATTCTCTCCATGGCTTCCATGTTGGTTGGCCCTGTCTGAGgtaatatcattt-----ctactcctatacatgtgttcatgaagctgaaagc--gtgagacttaagggataattcaaatgagaagcttcttctttgtttgtcaacagt

upper sequence: GLYMA05G28040.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0016g02270.t01 (Vitis vinifera), 5'ss of exon 2
AACCGGGTGTGGATAAGTTGGAGGAAGGTGAAGAGCTTCAGTGTGATCCTTCTGCTTACAATTCTCTTCATGCCTTTCACATTGGATGGCCATGTTTGAGgtattttcattcatggcctttttttgttcttgtcatttgttttctgtttttctatttggctccacagaaagaggaaagagaacaaaactttgagcttttt
| || || ||||| |||||||||||||| ||||||||||||||||| || ||||| |||||||||||||| ||||||||  |||||||||| |||||||||| |   |||  |   | || ||  ||  ||   ||||| ||  | ||||| | |||   ||     | |    ||           ||||         
AGCCTGGAGTGGACAAGTTGGAGGAAGGAGAAGAGCTTCAGTGTGACCCCTCTGCCTACAATTCTCTTCACGCCTTTCATGTTGGATGGCCTTGTTTGAGgtgtca-catggactacattattccgtattta--atttgattgttttttttttttttttttc-----ataatttaatttccttttccctttacag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193605053|gb|FK556367.1|FK556367
EST:     CTCTTCATGCCTTTCACATTGGATGGCCATGTTTGAG                         CTTTGATATTTTACGTGACTCTTTGGGCTTGGTTCGAAAAGAATTTCCCCA
genomic: CTCTTCATGCCTTTCACATTGGATGGCCATGTTTGAGgtattttcat ... cttttgacagCTTTGATATTTTACGTGACTCTTTGGGCTTGGTTCGAAAAGAATTTCCCCA
EST: gi|20811766|gb|BQ296244.1|BQ296244
EST:     TCTGCTTACAATTCTCTTCATGCCTTTCACATTGGATGGCCATGTTTGAG                         CTTTGATATTTTACGTGACTCTTTGGGCTTGGTTCGAAAAGAATTTCCCCA
genomic: TCTGCTTACAATTCTCTTCATGCCTTTCACATTGGATGGCCATGTTTGAGgtattttcat ... cttttgacagCTTTGATATTTTACGTGACTCTTTGGGCTTGGTTCGAAAAGAATTTCCCCA