Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtcccgttactttggttttctgtttaattattttttgcaagtcgaaaagtaaatttcaattgaatagcaatgccatcaatgtataaccaattg...

Basic information

species Glycine max
transcript GLYMA05G27940.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298166298|gb|HO009269.1|HO009269
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|18719541|gb|BM523201.1|BM523201
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|7686619|gb|AW757276.1|AW757276
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|6566144|gb|AW233783.1|AW233783
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|6952016|gb|AW424084.1|AW424084
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|254324956|gb|GR834381.1|GR834381
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|16996874|gb|BM086246.1|BM086246
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|5058385|gb|AI736917.1|AI736917
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|13788824|gb|BG651415.1|BG651415
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|19271182|gb|BM887438.1|BM887438
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|5510348|gb|AI856673.1|AI856673
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|18848858|gb|BM567969.1|BM567969
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|14259170|gb|BG882078.1|BG882078
EST:     CCAAGTCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CCAAGTCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|15813051|gb|BI785326.1|BI785326
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|209696899|gb|BW660464.1|BW660464
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|18730282|gb|BM525790.1|BM525790
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|12772559|gb|BG237550.1|BG237550
EST:     ACCAAGTCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: ACCAAGTCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|6913074|gb|AW394604.1|AW394604
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|12496577|gb|BG047134.1|BG047134
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|12496627|gb|BG047159.1|BG047159
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|15200901|gb|BI424589.1|BI424589
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|14990091|gb|BI315764.1|BI315764
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|298176448|gb|HO026683.1|HO026683
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|26269293|gb|CA820356.1|CA820356
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|298178897|gb|HO024632.1|HO024632
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|6455153|gb|AW185836.1|AW185836
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTTATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|298172000|gb|HO021592.1|HO021592
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGCTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|7145918|gb|AW507840.1|AW507840
EST:     CTTGCAAGGGTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGGCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|14990125|gb|BI315798.1|BI315798
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|298184857|gb|HO030070.1|HO030070
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|7042501|gb|AW472395.1|AW472395
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|24136303|gb|BU926813.1|BU926813
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|22930393|gb|BU547532.1|BU547532
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|16347198|gb|BI972793.1|BI972793
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|213596920|gb|DB964127.1|DB964127
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|13562772|gb|BG550992.1|BG550992
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCTCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|27426431|gb|CA937951.1|CA937951
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|10709618|gb|BF009342.1|BF009342
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|5666572|gb|AI930608.1|AI930608
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|5126866|gb|AI748602.1|AI748602
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|13312171|gb|BG405831.1|BG405831
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
EST: gi|19269566|gb|BM885822.1|BM885822
EST:     CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG                         AACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT
genomic: CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtc ... gtacttacagAACACTAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTTAAAGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGgtactgagtcccgttactttggttttctgtttaattattttttgcaagtcgaaaagtaaatttcaattgaatagcaatgccatcaatgtataaccaattg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagtaa