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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGgtaggaatgatttgtttcagctttttttatatatttttttttaacaattccttcataaattaaggcttattatcttatagctaatgctcagcttcgtgtgtgtag

Basic information

species Glycine max
transcript GLYMA05G26630.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213600472|gb|DB970324.1|DB970324
EST:     GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAG                         ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
genomic: GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGgtaggaatga ... gtgtgtgtagATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
EST: gi|151402287|gb|EV272100.1|EV272100
EST:     GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAG                         ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
genomic: GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGgtaggaatga ... gtgtgtgtagATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
EST: gi|254327807|gb|GR834772.1|GR834772
EST:     GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAG                         ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
genomic: GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGgtaggaatga ... gtgtgtgtagATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
EST: gi|213593691|gb|DB971713.1|DB971713
EST:     GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAG                         ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
genomic: GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGgtaggaatga ... gtgtgtgtagATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
EST: gi|209706563|gb|BW676111.1|BW676111
EST:     GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAG                         ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
genomic: GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGgtaggaatga ... gtgtgtgtagATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
EST: gi|192324953|gb|FK015404.1|FK015404
EST:     GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAG                         ATTGTCCATCATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
genomic: GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGgtaggaatga ... gtgtgtgtagATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
EST: gi|5606771|gb|AI900869.1|AI900869
EST:     GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAG                         ATTGTCCAACATATCTTACTT
genomic: GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGgtaggaatga ... gtgtgtgtagATTGTCCAACATATCTTACTT
EST: gi|26047656|gb|CA784373.1|CA784373
EST:     GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAG                         ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
genomic: GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGgtaggaatga ... gtgtgtgtagATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
EST: gi|213602225|gb|DB958485.1|DB958485
EST:     GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAG                         ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
genomic: GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGgtaggaatga ... gtgtgtgtagATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
EST: gi|51334723|gb|CO978589.1|CO978589
EST:     TCGGGATGTGCAGAAGTTGCAGCCAGAG                         ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
genomic: TCGGGATGTGCAGAAGTTGCAGCCAGAGgtaggaatga ... gtgtgtgtagATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
EST: gi|151408492|gb|EV278300.1|EV278300
EST:     GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAG                         ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
genomic: GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGgtaggaatga ... gtgtgtgtagATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGgtaggaatgatttgtttcagctttttttatatatttttttttaacaattccttcataaattaaggcttattatcttatagctaatgctcagcttcgtgtgtgtag

- - - - - - - - - - - - - - - - - - AGAAGT